MmuINT0050847 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69271488-69272060:-
Coord C1 exon
chr11:69271862-69272060
Coord A exon
chr11:69271713-69271861
Coord C2 exon
chr11:69271488-69271712
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATTGTGTGCTTTCCCACCAGACC
3' ss Score
9.69
Exon sequences
Seq C1 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAG
Seq A exon
GTACGTGAGGGGAGGGGCTCAGACCACCAATTAGCTCCCTGCCATCTTCTCTCACCTGGAACTCAAGTGCTCAGCTTGCCCCTTATTTCTCGGGGGGGGGGGGGGGGAGGGGGGAGGGGCCTCACATCGATTGTGTGCTTTCCCACCAG
Seq C2 exon
ACCACGTCAAACAATGTGCAGAGCATCATTGAGAGCAGAGTAGAGAAGCGGACCAAGGGTGTGTATGTGCCATTCGGGGGCAAAAGCATGATTACTTTTATGGATGACCTAAACATGCCTGCCAAGGACATGTTTGGGTCCCAGCCGCCCCTGGAGCTGATTCGCCTCTGGATTGACTACGGCTTCTGGTACGATCGTGTGAAGCAGAGCATCAAGCACATCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCGTCGTCAACATGTC
R:
GGATGTGCTTGATGCTCTGCT
Band lengths:
251-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: