BtaINT0050460 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28114627-28115723:+
Coord C1 exon
chr19:28114627-28114791
Coord A exon
chr19:28114792-28115597
Coord C2 exon
chr19:28115598-28115723
Length
806 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTCCCCTGCTGTCCTCCAGGGC
3' ss Score
10.75
Exon sequences
Seq C1 exon
GTGGCTGAGAAACTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGCAAGAGGTCTGAGGAGATGGAGATGAAGCTGGAGCGTGCTGGGATGCTGGTGTCCGGGCTGGCTGGCGAGAAGGCCCGATGGGAGGAGACAGTAAAG
Seq A exon
GTGAGGCCAGCTGCGCCCCCTGGCTCCCCTAGCTGTTGCCCACCACTGCGACCAGCTCCCAGCCCATTTAGGTGGAGGGACAGGAGGGGAAATGATGGCGATGCTTGGGTGTAGGGACACCCAAGAATGGGGCGTGGGCATTCTTCCTCTCCCATTTGGTGAGAATAGTGGGAGGAGAGGCTTTTGTGCCAGGAGGGATCTGCCCCCTTGTGTAGGTGGGGCTGGAAAACACTCACGAGGACCCTGATAGAGCCCACTGACCTGACTGAAGCCAACCTGGGGCATCTCATCTCTGATCTCAGTGAGCTCCTGGCTTCACAAGAGGGTTAGGCCTTATCACAAACTAACACTGCTGAATTCCCTGGTGGTCCAGTGATTAAGACTCCATGCTCTCACTGCCGAGGGCCTGGGATCTAAGATTCCACAAGCCATGTGGCACGACCAAGAAAAGAAAGAGAGAAGAAATAAACATTGCTGTTAAAGTTGGGGAACTCAAGGAAGTCCCCTCATGGTCTAGTGGTTAGGGTTTGGCACTACCACTGCCATGACCTGGATTTGATCCCTGGTCAGGGAACTGAGATCCTGCAAGTCACATGGAACGGCCAAAATATGAAAAAAATAAAACATGGGGAACTCAAAAGTTGTGAGGGTAGGGTTGAATTCTTGGGGCACAAGGATTTAGGAGAAGGAAAGACTCCCTCTGATCTGGACAGTGTCCAGAGTGGGGAGTGCCTTCAGACTTGTCCATGTGCCTCCAGTACTGGGGCCCAGGAAGACTTATACCTACCTCCCCTGCTGTCCTCCAG
Seq C2 exon
GGCCTGGAGGAGGATCTGGGCTACCTGGTGGGAGACTGTCTCCTGGCAGCTGCCTTCCTGTCCTATATGGGGCCCTTCCTGACCAACTACCGGGATGAGATAGTCAACCAAATCTGGATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.0=100)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAGAAACTGGAGATGC
R:
TCCTGATCCAGATTTGGTTGACT
Band lengths:
288-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development