DreINT0009253 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21301947-21302355:+
Coord C1 exon
chr7:21301947-21302111
Coord A exon
chr7:21302112-21302229
Coord C2 exon
chr7:21302230-21302355
Length
118 bp
Sequences
Splice sites
5' ss Seq
GATGTATGC
5' ss Score
3.89
3' ss Seq
TTGTGTGTATGATTGCTCAGGGT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTAGGAGAGAAACTTGATCATTTAAAAAGGCAATATGATGAAAAGCTGGCCCAGAAAGAAGAGTTAAGAAGGAAATCTGAGGACATGGAGCTCAAACTGGACCGAGCTGGCAAGTTGGTGTCTGGACTGGCTGGAGAAAGAGTTCGCTGGAAGGAGACAGTAGAT
Seq A exon
GTATGCGCACACACACACACATGCACACACATGCATGCACAGTCACCCTGATGTTTTATCTGTGGATGTGAAAATGCAGCTGGAGGACTCTGATGTGATTGTGTGTATGATTGCTCAG
Seq C2 exon
GGTCTGGAGAAGAACATGTCCTGTTTGGTGGGAGACTGTCTGCTGGCTGCTGCCTTCCTGTCCTACATGGGACCTTTCCTGTCCAACCACAGAGATGAGCTGGTTACAGATATCTGGATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.0=100)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATATGATGAAAAGCTGGCC
R:
AACCAGCTCATCTCTGTGGTTG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]