GgaINT0019502 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3091600-3092292:+
Coord C1 exon
chr12:3091600-3091791
Coord A exon
chr12:3091792-3092160
Coord C2 exon
chr12:3092161-3092292
Length
369 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
ATGTGCATCTTATTCCACAGCTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
AAAGCCTGGCGAGAGGCAGAAGAGGACCTGCGTGCAACTCAGCAGGTCCTTGAGGAAGCTAAGCGACGCCTGGAGGATGTTGAAAGTGGTATTGCCGTTCTGCAAGCCAAGTACAACAGCTGCATAGCCAAGAAGGAGGAACTGGAGATGAAGTGTGAGCAGTGTCAGCAGAGATTGGGCCGTGCTGCTACG
Seq A exon
GTAGGGAACAGCTCTGCCTACTTGCAAGAGATAACCTGACTTCAGGCCGAGGAGCACAGTGGTGAAGATCTCTGTGCCTGCCACTTCCAGCAGCATTGTGTGTCTGCAGCTTATGGCAATGCTAGGTTGGAGCTGCCTGGCCAGATCTCAGCATCACATTAGGGCTGATGTAGCTAATCTTCCCTCTGCCACAGCTTCCTTAGATAGTTACAGGGACAAATGAGAGCAACCCAGGACGAAGTGCTCAAAGCTGGGGACAGAAGTTAGGATAGGTGGTGCACCTCTGGCTCATACAGTCACCTACAGCATTACCCAGAGAGCAGCAGGTCTCAGACACAGCAGCTCTCACATGTGCATCTTATTCCACAG
Seq C2 exon
CTCATAAACAGCCTGGCTGATGAGAAGGTGCGCTGGCAGGACACCGTTGAGAACCTGGATTACAAGATCAACAACATTGCTGGGGACGTGCTGCTTGCAGCTGGCTTTGTTGCCTACCTGGGCCCTTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.9=100)
A:
NA
C2:
PF127772=MT=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGCAGAAGAGGACCTG
R:
AGTAAAAGGGCCCAGGTAGG
Band lengths:
315-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]