RnoINT0048613 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7354891-7355391:-
Coord C1 exon
chr16:7355200-7355391
Coord A exon
chr16:7355077-7355199
Coord C2 exon
chr16:7354891-7355076
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGC
5' ss Score
5.95
3' ss Seq
GTCACCGTGGGCGGAGATAGTCC
3' ss Score
-5.59
Exon sequences
Seq C1 exon
CAAGCCTTGCGAGAAGCCCAGGACGACCTGGAAGTCACCCAGAGGATACTAGAGGAGGCAAAGCACCACCTGCGCGAAGTGGAAGATGGCATCTCCACGCTGCAGGCCAAGTATCGAGAGTGCGTGACCAAGAAGGAGGAGCTGGAGATGAAGTGTGAGCAGTGTGAGCAGCGCCTAGGCCGGGCCGACAAG
Seq A exon
GTTCGCCACCCCGTGGGAGACCACAGAGACCACTGGCAGGCCCGCCGGGAAGACAACTATGGGTTGGCTCTCCCCACCCCCTTTATAGCAACCTGTGGGTGGGGTCACCGTGGGCGGAGATAG
Seq C2 exon
TCCCAGTCCCCAGGCCAGCCTCCCGGAGCCCATCCCACAAGGCTGCTTCTACAGCTCATCAACGGGCTAGCAGACGAAAAGGTTCGCTGGCAGGACACTGTGGAGAATCTGGAGAATATGCTTGACAACATTTTTGGCGATGTGCTGGTGGCTGCTGGCTTTGTGGCCTACCTGGGGCCCTTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
NA
C2:
PF127772=MT=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGAGGAGGCAAAGCACCA
R:
GATTCTCCACAGTGTCCTGCC
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]