DreINT0058008 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34396114-34396553:-
Coord C1 exon
chr11:34396362-34396553
Coord A exon
chr11:34396246-34396361
Coord C2 exon
chr11:34396114-34396245
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
GATGTTGTTGTGTGTGGCAGCTG
3' ss Score
7.92
Exon sequences
Seq C1 exon
CAAGCCTTGCAGGAAGCTCAGGAGGATCTGGCTGTAACACAGCGCATTCTGGATGATGCTAAGGGCAAACTGGCAGCTGTAGAGGAGGGCATTGCCACGCTTCAGGCCAAATACCACGAATGCCTGGCTAAGAGAGATGAGCTAGATGCTAAATGCCAGCTGTGCGAGAACAGACTGATCCGTGCAGATAAG
Seq A exon
GTGTGATTGCTTTAAACATGCTTTATTATCATACCTTTGCTTCAAATCTTCTGTCTTACTATATTGAAGCTTATCATACATACAGTTCAGATATAGGATGTTGTTGTGTGTGGCAG
Seq C2 exon
CTGATTGGTGGTTTGGCTGATGAAAAAGTGCGCTGGAGTGAAACCGTACAGCAGCTGGAGTATATGGTGAATAATGTGGCAGGAGATGTGCTGCTCGCTGCAGGATACGTTGCTTACCTCGGACCCTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(18.2=100)
A:
NA
C2:
PF127772=MT=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGAAGCTCAGGAGGAT
R:
ATACTCCAGCTGCTGTACGGT
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]