RnoINT0048919 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56045089-56045902:-
Coord C1 exon
chr10:56045738-56045902
Coord A exon
chr10:56045215-56045737
Coord C2 exon
chr10:56045089-56045214
Length
523 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CACCTCCCTCTGTGCACCAGGGC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTAGCAGAGAAACTGGAGATGCTGAAGAAACAGTACGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGCAAGAAATCGGAAGAGATGGAGCTGAAGCTGGAACGGGCAGGAATGTTGGTGTCTGGGCTAGCTGGGGAAAAGGCCCGATGGGAAGAGACCGTGCAG
Seq A exon
GTGAGATGGTTCGGCAGAGTAGCTGCTCTCCCACACTGCTCAAGAGGTCTGTCTCTGCATCCACTCAGAGACAATAGTTGGGGAAAACAAGGGTACATGGCTGTAGGAATTGAGAGGAGAAACCCTCCCTTCCTCACGTTTGATGAGAATATGCAAGGAAGGGACTAGTATCCTGACCAGGAAGGGTGAGTTCATGAGGGAACTGGAAGGCACACCAGACCTCTTGGTTAACAGCTTGTCTTCCTGAGAGATAAGAGCCAGGGGTCATCTTGTCTCTATCTCACTGCATTCCTGGCTCCCTGCAAGGGGCAGATCTTATCAATGGATAATTAGCATACACATTGCTGTCAGAGGCCAGGACTCCGGAGTGATCGAGTTCTCTGCCTGCAGGGTTTTAGAAAGGGGAGGCTAGCTTTGATCTAGACCAGAATCAAAGGAGCAAAGGAGACTGTCTTCCAAAACACTCCAGCTTATCTCCAAAAGTCTGAGACCCCAGGCACTTACACCTCCCTCTGTGCACCAG
Seq C2 exon
GGCCTGGAGGAGGATCTGGGTTACCTCGTGGGTGACTGTCTGATTGCAGCTGCGTTCTTGTCCTACATGGGACCCTTTCTGACCAACTACCGGGATGAGATTGTCAACCAAATCTGGATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.0=100)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGAAACTGGAGATGCTG
R:
TCTTGATCCAGATTTGGTTGACA
Band lengths:
287-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]