MmuINT0050866 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69437171-69437961:-
Coord C1 exon
chr11:69437797-69437961
Coord A exon
chr11:69437297-69437796
Coord C2 exon
chr11:69437171-69437296
Length
500 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TACCTCCCTCTGTACACCAGGGC
3' ss Score
6.38
Exon sequences
Seq C1 exon
GTGGCAGAGAAATTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGAAAGAAATCGGAGGAGATGGAGCTGAAGCTGGAGCGAGCAGGAATGTTGGTGTCTGGGCTAGCTGGTGAAAAGGCACGATGGGAAGAGACTGTGCAG
Seq A exon
GTGAGATGGGTGGTCCCACGCCACTCAGGAGGTCCATCTCCGTGTCCACGGAGAGAGAGTAGGAAAACAAGAGCACATTGGCTGTAGGGAATCGAGAGTAGAAATCCCTCCCCTTCTCACGTTTGATGAGAGTATACAGGGAATGGCATCCTGAACACATGGTGAGTTCCATGCAGGAACTAGAAGGCACACAAGACCTCTTAGTTAACAGCTTGTCTTCCTGAGAGATAACAGACTGGGGTCATCTTGTCTCTATTTCACAGAATTCCTGGCTCCCTGCAAGGGGTAGATCTTATCAGTGGATAATTAGCATACACATGGCTGTCCGGGACCAGGACTCCAGAGTGATTGAGTTCTCAGCCTGAAGGGATTTAGAAAAGGGAGACTAGCTTTGATCTAGACCAGAATCAAAGGAGCAAAGGAGACTGTCTTTCAAAACACTCTAGCTTATCTCCAAAGGTCTGAAGCCCCAGGCGCTTATACCTCCCTCTGTACACCAG
Seq C2 exon
GGCCTGGAGGAGGATCTGGGTTACCTGGTGGGCGACTGTCTGATTGCAGCTGCGTTCTTGTCCTACATGGGACCCTTTCTGACCAATTACCGGGATGAGATTATCAATCAAATCTGGATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.0=100)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAGAAATTGGAGATGCT
R:
CTTCCTGATCCAGATTTGATTGATAA
Band lengths:
290-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types