BtaINT0050133 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49051459-49052564:-
Coord C1 exon
chr22:49052058-49052564
Coord A exon
chr22:49051585-49052057
Coord C2 exon
chr22:49051459-49051584
Length
473 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
3' ss Seq
AGAGTCTGGTGTCTCTCCAGGGC
3' ss Score
7.69
Exon sequences
Seq C1 exon
CAAGCCTTGCGGGAGGCCCAGGACGACCTGGAGGTGACACAGAGGATCCTGGAGGAGGCGAAGCAGCGCCTGCACGAGGTGGAGGATGGCATTGCCACGATGCAGGCCAAGTACCGAGAGTGCATCGCCAAGAAGGAGGAGCTGGAGCTGAAGTGTGAGCAGTGCGAGCAGCGGCTGGGCCGTGCTGACAAGGTGCGCACCCCTCTGGGGACGGCCCGTAAGCACGGCCTGCCCCCCATGGGCTGGAGGGGCCTGAGCAGTAGAGGGGGTGGTCCTGGGGTGGCTGTCCCTTCCCTCTCCCCAGCTACCTTGGTCGGGGGGACTGCACCAGGCAGGGACATCCAGGGCCAGCCTCCCCATGGACTGTCCCTGCAGCTCATCAACGGGCTGTCAGACGAGCGGGTGCGCTGGCAGGAGACGGTGGAGAGCCTGGAACACATGCTTGACAGCATCTTCGGGGACGTGCTGGTGGCCGCCGGCTTTGTGGCCTACCTGGGCCCCTTCACA
Seq A exon
GTGAGGACCGCCCCAGCCCCGCTGTGAGGCCTCACTTCCATAAGTAGTGGCCTGAGGGTGGCTCTTCTCTCACACACTCATTCAACAAACATTTTTTTTTAGATGTCCTGTCTGAGCCAGGAGCCGTTCTGGGTACTGGGGAAAAGGCAGCTTCCAAAACAGCCAGAAATCCTGCCATGCAGGGCTGGCGTTTCTAGACAGAAGGCTGAGCTCGTTCTTCTGGGCTTGCTGTGCACCTCTCCCTCAGTCCTCACAGCTGCCCTGATGGGTGGCCACTGTTGTCATCCCCCCGGTTTCCCTGGGAAGGGGCTGAGAGGTGGGGAGGCCAAGGATGTTCCCTATGGTGGGGCTAGGGCTCAGGCCTCCTGCTCTGCGCGGACCCCTCTGTGCAGCTGCGAGCACTGGGTGCAGAGGAAGTGGGAGGGCATTGTGGCTGTCTTGGTGGGGTAGCTCAGAGTCTGGTGTCTCTCCAG
Seq C2 exon
GGCCAGTACCGCACAGTGCTGTATGACAGCTGGGTCAAGCAGCTCGTGGCCCACCGCGTCCCACACACCGCCGAGCCCACGCTGATCGGGACACTGGGGAACCCCGTGAAGATCCGCTCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(22.4=39.1),PF127772=MT=PU(75.4=29.0)
A:
NA
C2:
PF127772=MT=PD(21.5=33.3),PF127812=AAA_9=PU(4.3=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAGAGGGGGTGGTCCTG
R:
TTCCCCAGTGTCCCGATCAG
Band lengths:
351-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]