RnoINT0048615 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7354303-7355076:-
Coord C1 exon
chr16:7354891-7355076
Coord A exon
chr16:7354429-7354890
Coord C2 exon
chr16:7354303-7354428
Length
462 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
TAAGTTTCACATCTCCCCAGGGG
3' ss Score
7.53
Exon sequences
Seq C1 exon
TCCCAGTCCCCAGGCCAGCCTCCCGGAGCCCATCCCACAAGGCTGCTTCTACAGCTCATCAACGGGCTAGCAGACGAAAAGGTTCGCTGGCAGGACACTGTGGAGAATCTGGAGAATATGCTTGACAACATTTTTGGCGATGTGCTGGTGGCTGCTGGCTTTGTGGCCTACCTGGGGCCCTTCACG
Seq A exon
GTAAAGAATCCCCTACTGTATCCTAACCAGCTTTATCCCACAAAGAGAGCCCCCTCCCCTTGAGGCCTTACCTCTGTGAGGACAACCTGTGGGGCAGCTCTTCTTCCTTCCCTCATTGTAGCATATAGGTACCAAGCAGGTACACAGCTGTCCACACAAGTTGCAAGAGCCCCTATTGGAAGTATATAAAGGCTCACACATGTGTACCCATGCTAAACACTGCTCTAAAATGCTTCACTGTGTGCCCCACTGAATCCTCAGAGCCATCTTTTGGGAAGACCCTGCAGGCATGACCCACTTCATAGACAAGGGTCTGAGGTTTGTAGGATCCAAGCAGGTCTGAAATGTCTATAATGTCCAGCTCCTCATCTGAGATCTGACTCCTGCATGCAGTGTTGTAGCCAGAGGGGAGGAGAACGCTGTGTGCCTAGTGTGGTGGCCTTAAGTTTCACATCTCCCCAG
Seq C2 exon
GGGCAGTACCGTGCAGCGCTCTATGAGTACTGGGTCAACCAGCTCACAGTTTACGGTGTCCCACACACCTCCAAGCCCACGCTGATTTCAACCCTGGGAAACCCCGTGAAGATCCGCTCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.5=100)
A:
NA
C2:
PF127772=MT=PD(3.8=33.3),PF127812=AAA_9=PU(4.3=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCATCCCACAAGGCT
R:
TGCCAAGAGCGGATCTTCAC
Band lengths:
286-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]