GgaINT0019504 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3092161-3092766:+
Coord C1 exon
chr12:3092161-3092292
Coord A exon
chr12:3092293-3092640
Coord C2 exon
chr12:3092641-3092766
Length
348 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GATGGTGCTTCTTGTGGCAGGGA
3' ss Score
6.1
Exon sequences
Seq C1 exon
CTCATAAACAGCCTGGCTGATGAGAAGGTGCGCTGGCAGGACACCGTTGAGAACCTGGATTACAAGATCAACAACATTGCTGGGGACGTGCTGCTTGCAGCTGGCTTTGTTGCCTACCTGGGCCCTTTTACT
Seq A exon
GTAAGTATGCAGGGCTCCCCGCAGTGGGCTCTATTAGCTGCTTTGCTTTCCTGCCTTTTGTTGTTGCCAGCTAGATAGGCTTCAAGTCAGATTCTGCCCTACTCTGGGGTCAGCAGCTGGCAGTTTGCTGTACTTCCCAGCCCCTCTGGTGACCTGGCTGCCCAGGATGTCTACCAGCCCTGCCTTGGCATGTGGCTACCTCCTAAGAGCAAGGTCAGAGCTGTAACACCACGATCCCTTTAAGCTGGGCACACAGAATAGGTCACGTTGGAATAGAAGGAGGAAGGTTTTGTTGCAAACTGTGGAATAGTTGCTACTAAAAGACTGTGATGGTGCTTCTTGTGGCAG
Seq C2 exon
GGACAGTACCGCGTGGCGCTGTGCAAGGAGTGGCTGGGAAAGCTCTCAGAAAACAACATTCCTCACACCGAGGAGCCAAACCTGATCAGCACTCTTGGGGATCCCGTGGAAATCCGCTCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
NA
C2:
PF127772=MT=PD(4.0=33.3),PF127812=AAA_9=PU(4.8=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGCTGATGAGAAGGT
R:
GCCAGGAGCGGATTTCCAC
Band lengths:
247-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]