GgaINT0019504 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2919591-2920302:+
Coord C1 exon
chr12:2919591-2919824
Coord A exon
chr12:2919825-2920172
Coord C2 exon
chr12:2920173-2920302
Length
348 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GATGGTGCTTCTTGTGGCAGGGA
3' ss Score
6.1
Exon sequences
Seq C1 exon
GATAGGTGGTGCACCTCTGGCTCATACAGTCACCTACAGCATTACCCAGAGAGCAGCAGGTCTCAGACACAGCAGCTCTCACATGTGCATCTTATTCCACAGCTCATAAACAGCCTGGCTGATGAGAAGGTGCGCTGGCAGGACACCGTTGAGAACCTGGATTACAAGATCAACAACATTGCTGGGGACGTGCTGCTTGCAGCTGGCTTTGTTGCCTACCTGGGCCCTTTTACT
Seq A exon
GTAAGTATGCAGGGCTCCCCGCAGTGGGCTCTATTAGCTGCTTTGCTTTCCTGCCTTTTGTTGTTGCCAGCTAGATAGGCTTCAAGTCAGATTCTGCCCTACTCTGGGGTCAGCAGCTGGCAGTTTGCTGTACTTCCCAGCCCCTCTGGTGACCTGGCTGCCCAGGATGTCTACCAGCCCTGCCTTGGCATGTGGCTACCTCCTAAGAGCAAGGTCAGAGCTGTAACACCACGATCCCTTTAAGCTGGGCACACAGAATAGGTCACGTTGGAATAGAAGGAGGAAGGTTTTGTTGCAAACTGTGGAATAGTTGCTACTAAAAGACTGTGATGGTGCTTCTTGTGGCAG
Seq C2 exon
GGACAGTACCGCGTGGCGCTGTGCAAGGAGTGGCTGGGAAAGCTCTCAGAAAACAACATTCCTCACACCGAGGAGCCAAACCTGATCAGCACTCTTGGGGATCCCGTGGAAATCCGCTCCTGGCAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF127772=MT=PU(78.7=75.6)
A:
NA
C2:
PF127772=MT=PD(18.7=31.8),PF127812=AAA_9=PU(5.6=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTCTGGCTCATACAGT
R:
GAGCGGATTTCCACGGGATC
Band lengths:
344-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]