DreINT0058009 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34394364-34396245:-
Coord C1 exon
chr11:34396114-34396245
Coord A exon
chr11:34394490-34396113
Coord C2 exon
chr11:34394364-34394489
Length
1624 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ATATTGTTTGTTTTCTTCAGGGC
3' ss Score
10.51
Exon sequences
Seq C1 exon
CTGATTGGTGGTTTGGCTGATGAAAAAGTGCGCTGGAGTGAAACCGTACAGCAGCTGGAGTATATGGTGAATAATGTGGCAGGAGATGTGCTGCTCGCTGCAGGATACGTTGCTTACCTCGGACCCTTCACT
Seq A exon
GTGAGTGTGTGGGAGTGCGTGCAGCATGAAAAAGCACGCTGGGAAGAATGATGCTTGTATTTGAGCTCATTATAAGAGTAGTTGCTTTTCTAACAAATAAAAATGAACCCCAAATCAACATACAGTTCAAGTCAGATTTATTAGTCCTTCTGAATTATCTGTCACCCTGTAAAGAAGATTTGTTCAACACATTTCTAAACCTAATAGTACTCATTTCTAATAACTGATTTCTTTCATCTTTGCCATGATGACTGTATATAATATTTTACTAGATATTTTTCAAGATGCCAGTATTCAGCTTAAAGCGTGATTTAAAGGCTTAACTATGTTATATAGACAAGTAAGGGTAATTAGGCAAGTCAGTGTATAAAGATGGTTTGTTCTGTTAATATTTGGAAAAAATATAGCTTAAAAGGCCTAATAATATTGACTCAAAAATATTAAAAACTTTTATTCTAGCCTAAACAAAATAAATAAAACTTTCTCTAGATTATATATTATAATATTATAATATATTTTCTATGGTGTGGAGATACAAGATGTGCAGCGTCTGAAACTACAAATACTGGAAGCCTGTGCTGGCCTTTCTCGTGCGGTGGTGCTATCAGTGTGTGAAGAGTGGGAGAAGAGGGTTGCATTGACAATCCATCACAATGGGCAGCACATTGAACACATTTTATAAATGGTCAGAAAGTTGTAAATAACTCATGAAAAAATAAAGTTGTTTTTCTTGTGAAATTCCCAATAAGTTTGATGTGTCAAACGACCCTTTTTAATTTTTTAATCCTATTAAAAAAACAAAAGTTAGATCCAAGATGACCGACTTCAAAATGGCCACCATGGTCACCACCCATCTTGAAAAGTTTGCCCCCTCACATATACTAATGTGCCACAACCAGGATGTTAATATCACCAACCATTCCCATTTTATTAAGGTGTATCCATATAAATGACCCACCCTGTATAATATTATATGAAATACTCAGAAAAATGTTTTGCTCTGTTGGTCAATTTCTATTTGGGAACATATTTGAAAAAAAAAATTACAAGAGGGCTAATATATATGACTTTAACTGTACATAATACATTGCAATAATTAAAATTTGCATTCTAACAATAAAAGTCACATCTTTAACATCTTACTATGAGATTTCACCACCTGTGTAGTGAATAGACGTAAATATGCAATAAATAGTATTTTCAGAATAATAATTCACAGTTGACTGTAAGTTGAGCTGGGTCAAAAATGTAGTGTTGGTGGAAAAAAACAGTAACATTAGTATACAGTATAGGTTGCATTCATAACTGTTACATTTGGAATTTATTTAAAGAAGGCAAATAAAATCAAGCATTGATAAGCATTGCTTAAAGTACATGTATTTTAGCTACTGTAATAAATCTAATTGAAGAATATTCAGAATAGAAAAAGGAATTGGGAAACATTTTAGTTTATTATCATTTTACTAAACTAAAATCGTTTTACTCAAACTCTTAACTGTAAAGTGTAAATCCAAAGAAATTAGATTTTACAAGTATTCTCTGGACACTTTGGAAAAGATTTAAGTATGTTTCAGATTTATATTTTAAAAATGATAATCTGGAAAATATTGTTTGTTTTCTTCAG
Seq C2 exon
GGCGAGTATCGTTCAGCAATGGCTGAAGAGTGGCTCAGGGGTTTTAAAGATCTGGCGGTTCCTCACACAGAACAGCCCAACCTGATCAGTACCCTGGGAGACAAAGTCAAAATCCGCTCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.5=100)
A:
NA
C2:
PF127772=MT=PD(4.3=34.9),PF127812=AAA_9=PU(4.8=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGGTGGTTTGGCTGATGA
R:
GCCAGGAGCGGATTTTGACTT
Band lengths:
255-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]