BtaINT0050483 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28133952-28134582:+
Coord C1 exon
chr19:28133952-28134102
Coord A exon
chr19:28134103-28134270
Coord C2 exon
chr19:28134271-28134582
Length
168 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGA
5' ss Score
2.36
3' ss Seq
TCTCCTGTCCTTTCCTGCAGGCA
3' ss Score
13.51
Exon sequences
Seq C1 exon
GATGGTGTCTGGGTTCGGGGTCTATACCTGGAGGGTGCGGGCTGGGACCGGAAGAACTCCTGCTTGGTGGAGGCAGAACCCATGCAGCTTGTCTGCCTCATGCCCACCATCCACTTCCGGCCTACTGAGAGCCGCAAGAAGAGTGCCAAGG
Seq A exon
GTGGGACAGTTTGCCCCCTTCCTAGTTTGCCTGCCCCCTCCCTAGTTTGCATCCTAACCCAGCCTCCGCTCCCCAGCACCGCTCCCCCCGCCCCCCCCCCCCATCTGCTCCTGCCCTGCTTTCCCAGTGGCTCCAGGGTCTGACTCATTCTCCTGTCCTTTCCTGCAG
Seq C2 exon
GCATGTATTCCTGTCCCTGCTATTACTATCCCAACCGGGCAGGCAGCTCAGACCGTGCATCCTTCGTTATTGGCATCGACCTCCGCTCTGGGACCATGACCTCTGATCACTGGATCAAGAGAGGCACTGCTCTACTCATGAGCCTGGATAACTGAGAGGGCCTCTTCTTCTTTCCGTTTGGGGGGGGTGAGGGTCGAGGACTTAAGGAGCCAAGGCTGATAATGTACCTTGGACAGAGACCAGGCTTCACTCAGGCCTTTACCTCGGTTGAATTTGTCGTGTGATGAGGCCCTGGTAATACCTAGTCGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.7=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGCCGCAAGAAGAGTG
R:
AGCCTTGGCTCCTTAAGTCCT
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development