MmuINT0050889 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69420809-69421420:-
Coord C1 exon
chr11:69421270-69421420
Coord A exon
chr11:69421148-69421269
Coord C2 exon
chr11:69420809-69421147
Length
122 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGA
5' ss Score
2.36
3' ss Seq
CTTCTTTTCTTCTCCCCTAGGCA
3' ss Score
12.25
Exon sequences
Seq C1 exon
GATGGAGTTTGGGTTCGGGGCCTGTACCTGGAGGGTGCTGGCTGGGACCGAAAGAATTCTTGTTTAGTGGAGGCGGAGCCCATGCAGCTGGTCTGCCTCATGCCCACGATCCACTTCCGTCCAGCAGAGAGCCGAAAGAAAAGTGCCAAGG
Seq A exon
GTGGGAAACTGCCCCCTCCCTATCCCGTTTGGATACTAACCCATCCTCCCTGCTCCAGTTCCCAAATGCACTTGCTCTGATCTTCCAGGCTCCAGAATCTTACTTCTTTTCTTCTCCCCTAG
Seq C2 exon
GCATGTACTCCTGTCCCTGCTATTATTATCCCAACCGGGCAGGCAGCACAGATCGAGCCTCCTTTGTCATAGGCATCGATCTCCGATCTGGATCCATGACATCTGATCACTGGATTAAGAGGGGCACTGCTCTACTGATGAGCCTGGACAGCTGATGAGCTCTTCTCTCCTCCTTGAGAGGGTCGGAAGCCCTAGGACCTTGAACTAAAGCTGGATCTCAGGCTTTGACTTTAGCTGAATCTAGCATATAGTGACACTCTGACAGTACCTAGTGGCGCTAGCGGAAAAGGTGGAAGACTTGTATTGGCGCTCAGTGCAGTAAAAACCGTGCAAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.7=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGGACCGAAAGAATT
R:
AGCAGTGCCCCTCTTAATCCA
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types