DreINT0009276 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21359621-21360231:+
Coord C1 exon
chr7:21359621-21359771
Coord A exon
chr7:21359772-21359876
Coord C2 exon
chr7:21359877-21360231
Length
105 bp
Sequences
Splice sites
5' ss Seq
AGAGTTAGT
5' ss Score
0.9
3' ss Seq
GTGTGTTTGTGACTGTGCAGATA
3' ss Score
7.98
Exon sequences
Seq C1 exon
GATGGAGTGCTCATCCAGGGTCTGTTTCTGGAAGGCGCAGGCTGGGATAAGAAAGCTTCCTGTCTGGTTGAGGCAGAGCCCATGCAGCTGGTCTGCCCAATGCCCACCATCCACTTCAAACCAGTGGAGAGCCGCAAGAGATTGGCCAAGA
Seq A exon
GTTAGTACACACTCCACACACACGACCATGTCTTACTGAATGTTCTCTCCTGTATACATTTCCCGAGTAACTGATTTTCTTGTGTGTGTGTTTGTGACTGTGCAG
Seq C2 exon
ATATGTACTCATGTCCCTGTTACTACTATCCAGTGCGCTCGGGCAGTTCTGGTCGTCAGTCATTCGTGGTGGCAGTCGATCTGAAGTCTGGAGCTGTGCCTTATGATCACTGGATCAAAAGAGGAACTGCTCTGCTCATGAGCCTTGATAACTAAACACACACACACACACACTCACACTTACAGTGACACTTGATTAACTGTCTAATTTTATCCGAAGATCTTTTTACCTCTTCTGCATTTGATTTAAAAAGAGAACTGAATATGCAATCACAAATGTGCTATCAATTGATGTTTTATGAACTTGTGGTGTTGTAAATTCATTGGAAAAAGGGTTTAATAAAACAGCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:86
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.6=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCATCCAGGGTCTGTT
R:
AAGGCACAGCTCCAGACTTCA
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]