RnoINT0048942 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56029029-56029634:-
Coord C1 exon
chr10:56029484-56029634
Coord A exon
chr10:56029361-56029483
Coord C2 exon
chr10:56029029-56029360
Length
123 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGA
5' ss Score
2.36
3' ss Seq
TTTCTTCTCTTCTCCCCCAGGCA
3' ss Score
12.45
Exon sequences
Seq C1 exon
GACGGCGTCTGGGTTCGGGGCCTGTACCTGGAGGGTGCTGGCTGGGACCGGAAGAACTCTTGTTTAGTGGAGGCAGAGCCCATGCAGTTGGTCTGCCTCATGCCCACCATCCACTTCCGTCCAGCAGAGAGCCGAAAGAAAAGTGCCAAGG
Seq A exon
GTGGGAAACTGTCCCCTCCCCATCTCTTGTTTGGATACTAACCCATCCTCTCTGCTCAGTCCTCAAATGTCCCTGCTCTCATCTTCCAGGCTTCCGAATCTGATTTCTTCTCTTCTCCCCCAG
Seq C2 exon
GCATGTATTCCTGTCCGTGCTATTATTACCCCAACCGGGCAGGCAGCGCAGACCGAGCCTCCTTTGTCATAGGCATCGATCTCCGATCTGGAGCCATGACATCTGACCACTGGATTAAGAGGGGCACTGCTCTGCTGATGAGCCTGGACAACTGATGGACCATTCTGTCCTGTTCCAGAGGGTCGGAAGACCCAGGACCTTGAACTAAAGCTGGATCTCAGGCTTTGATCTTAGCTGAATCCAGCATATAACGACTCCCTGGCGGTACCTAGTAGCGCTAGCGGTATAGGTGGAAGACTTATTTTGGAGCTCAGCGCAGTAAAATACGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:87
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(6.7=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGCCCACCATCCACTTC
R:
GTCTTCCGACCCTCTGGAACA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]