BtaINT0050526 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18957490-18959536:-
Coord C1 exon
chr25:18959393-18959536
Coord A exon
chr25:18958129-18959392
Coord C2 exon
chr25:18957490-18958128
Length
1264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GAGACTTATCTTTTCCACAGGTC
3' ss Score
9.6
Exon sequences
Seq C1 exon
GATGTAGAGAAGTTTATCCGGCTTTGGATTCATGAGGTTTACCGGGTCTTCTATGACCGTCTGATTGATCATGAAGATAGACAGGTCTTTTTTAACATGGTAAGGGAAACCACCTCCAATTGCTTCAAGCAGTCTGTGGAAAAG
Seq A exon
GTAAGCAAGACCCTGTGATCTTTTGACCTCAGAAATTGCCCCAAATATGTGATCATGCTAGTCTCAGATTTCAGGCTCCCTTCCTAGTAGAGACTTTGTTGTTGTTTTTCAGTCACTCAGTCGTGTCCAACTCTTTTGCAACCCCATGGACTGTAGCCCACCAGCTTCTCTATGGGATTTTCCAGGCAAGAATACTGGAATAGGTTGCCATTTCCTTCTCCAGGGGGTCTTGCTGACCCAGGAATTGAACCCAGATTTGTAGAATTGGCAGGTGGATTCTTGACCACTGAGCCACCAGGAAAGCCCAAATAGAGACTTATAGCTCTGCTTTCTGAAACTCAAGAAACAGTGTATTGAGCCAGCTAGTCATTTGATTTGGTGATATACTGCCGTTTTTGTTGTTCAGTCACCAAGTCATGTCCGACTCTTTGCAACCCCATGGACTGCAGCCCACCAGGCTTCCCTGTCCCAAGTAATATAATACTTGGTCCAATTTCACTTGACTTTACAGGTAACATATAAGTTTAGATACATTCAAACTTATCATTTATGAAAAGATGTTTTGTTTCTAATTAATGTAAAATACATTTTCAAGGTCAGATAACTTTTGAGTTAAGAAATAAAAACACCATGAATTTTTATTGTTTGATTGATGCCCTGTGTAAAGCCCAAGTGAAAGATTGTCTTTGTTTCCTATTCGTAAATATTTTCTCTTTTCCATTTTGATATAAGAAAAGTTTAAACCCTATATATTTGCATCATCTAATTCTACCTCTACTTTTAAGAAGCTATGATTTCTCCATAGAAAAAGTGCAAGTGTTTCATATTTCATCCAGAGGCCATGTACAGAAGCACTGCTAGTTTCTAATATCAGAAAGAAGAAGCATCTAAAACATTTCTACTCTAGGTACAGAGTGGGAACAGGGGGCAAGGCCTGCACCTCTATTTGGTGAAGAAGCAAGTACATTACAAATGATCTCACCTTTGACCACCTCCTCCTGGGATCTTATAATCTGTCCACCAATGTTTTAATCACTTAGCAAACCGATTGACCCTTGCTTTCACACTCTTTTCTCAATTGTCCTTTCATCATAGTCTTTACAACCATCAAATACACGTATTTTGTTTAAAGAAACAAAACTGTTGTGAACCATGATTTTGAAGAATGTGCTCAGAGGAAACAAACACATCTCCTGTTCCCTCCTAGCTCCCACTACCATGGTAGTTGGAGTGAATGCCTGCCTGAGACTTATCTTTTCCACAG
Seq C2 exon
GTCCTCATCCACCTATCACCCACTGGAAAGATAGTTGATGATAATATCCGTAGCCTCTTCTTTGGAGATTTCTTCAAGCCAGAAAGTGACCAAAAGATATATGATGAGATCACTGACTTAAAACAGCTCACAGTGGTCATGGAATATTACCTGGAAGAGTTCAACAATATCAGCAAGGCCCCCATGTCCTTGGTGATGTTCAGGTTTGCCATTGAGCATATCTCTAGGATCTGCAGGGTCCTGAAGCAGGACAAAGGCCACTTGCTCCTGGTGGGCATTGGGGGCAGTGGGCGGCAAAGTGCCAGCAAACTGTCCACATTCATGAACTCATATGAGCTATACCAGATCGAGATCACAAAAAGCTACTCAGGCAACGACTGGCGAGAGGACCTGAAGAAGATCATGCTCCAGGTTGGGGTGGCCACCAAAAGTACTGTGTTCCTCTTCGCTGATAATCAGATCAAGGATGAGTCATTCGTTGAGGACATCAACATGCTTCTGAACACCGGTGATGTGCCCAACATCTTCCCTGCTGATGAGAAGGCCGACATTGTGGAGAAGATGCAAATGGCAGCCAGGACAGAAGGAGAAAAGATCGAAGTCACTCCTCTTTCTATGTATAACTTCTTCATCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(4.1=22.9)
A:
NA
C2:
PF127802=AAA_8=PU(58.5=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTTTGGATTCATGAGGT
R:
TGCTCAATGGCAAACCTGAACA
Band lengths:
345-1609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]