GgaINT0013864 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14999561-15001004:-
Coord C1 exon
chr14:15000861-15001004
Coord A exon
chr14:15000228-15000860
Coord C2 exon
chr14:14999561-15000227
Length
633 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTTGCGTTGATCCCTGTAGGTA
3' ss Score
9.48
Exon sequences
Seq C1 exon
AGTGAAGACAAGCTGATCCGTCTTTGGATTCATGAGGTGTACCGAGTTTTCTATGATCGCTTAGTTGATGAGGAGGACAGGGAGGTATTCTTTCAGATGGTAAAAAAGACAACATCAGACAGCTTCAAGCAGAACCTTGATAAG
Seq A exon
GTATTTTTCAGCAACATGGTAGACCCAAGTGTTTCAGAAACACTTAGACACTGAGATTGCATTAGCACTGGATATATTTTGAATGATTTATATTGGTGCATTCATAAAGTTTGGATTTTCGTCTGTTTGTATTATGTATTATATGTACTCTTATGGAAACTAATATTTCATATCTGCATGATCCAGAACTTGAAAAGGATTCTGCTTTGGTACAGAGGACTGCGTGGGATAACTGTCGTTCACTGTTCACTTGTGCTCCTGCTTAACATACACTGGAATGAGTTGCTGGGAGTAGTGGGTACTTTTCTGAGAAGCCTTTTGGCAACTTTTCGTGCTTTTCACAGTACAATCACCATGTGAGATGTGCATGGCAGAAACTTGCATGCCTGCTTACAGCATATAACTCTGTTCAGGAGGTTTTTCTGTTTCACCTCTCCACCCTCTTCCACTCTTCCACTCTCTTTTTTTTCTTTCTTTCGTCTTTGTTTCTTTTTTTTTCTTCCATACTAAGATGATAACCAAAATGGCTGGAAAATGGCACTTCCCGCAGTATTATTATTATATGATAAGAATAATTACTGCTTTAACGGAAGTAATTCTCCAGTAGTCTGAATTTTGCGTTGATCCCTGTAG
Seq C2 exon
GTACTGAGTCATCTCTCACCCACTGGCAAGGTCACAGATGATCATATCCGCAGCCTTTTCTTTGGAGACTATCTGAAGCCAGACAGTAATGCAAAAGTGTACGATGAAATCACAGACTTGAAGGAACTGACAGCTGTGATGGAATCCTACCTGGAGGAATACAACAATACCAGCAGAGCACCAATGCCCCTAGTCATGTTCAAGTTTGCTATTGAGCATATCTCAAGGATATGCAGAGTACTGAAACAAGATAATGGACATCTTTTGTTGGTGGGCATTGGTGGAAGTGGTCGACAAAGTGCTACCAAGCTAGCCACCTACATGAGTATGTTTGAACTCTTTCAAATTGAAATTACAAAGTCCTATGGAATCAATGAATGGAAAGAAGATATTAAACGAGTCATGCTAAAGGCTGGTGTTGGTAACAAGAACATTTCCTTTTTGTTCTGTGATAATCAAATAAAGGATGAAGCATTTATAGAAGACATCAACATGCTTTTAAATACTGGTGATGTGCCTAATATTTTTGCTGCTGATGAGAAGGCTGAAATTGTTGAGAAAATGCAAAGTGCATCAAGGATGGGGAGTGAGAAAATTGAAGCTACTCCGCTTGCTATGTACAATTTCTTTATTGAAAGGATGAAGAAAAATTTACATATTGTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(4.1=22.9)
A:
NA
C2:
PF127802=AAA_8=PU(62.6=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGGAGGACAGGGAGG
R:
GCCCACCAACAAAAGATGTCC
Band lengths:
356-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]