DreINT0009313 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39596439-39599077:+
Coord C1 exon
chr24:39596439-39596582
Coord A exon
chr24:39596583-39598410
Coord C2 exon
chr24:39598411-39599077
Length
1828 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CATCTCTTTTTTCTGTCCAGCTC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAAGGTGATAAAGTCATTCGGTTGTGGATCCATGAGGTGTATCGTGTGTTTTATGATCGACTGGTTGATAATGATGACAGAGGCAAATTTTTTAACATCGTCAAAGAGAGGACATCAGCGTATTTCAAGCTAAGCCTTGACAAG
Seq A exon
GTAATTGCATTTGATAGTATTTTAGCCTTGCCGAAAATTAAATGCTAATAATAATTGCACTCAATTCATTCAACTCAAATCATTCACTTCTCAGCACTTTACAATTTCTTCAGGTGTACCCCAGGGTTCAGTCCTGGGGCCCCTGCTTTTTTATATGTATCTCCCTCCCCTTGGTGATATCCTCCGTAAATATAACATACAGTTCCACTGCTATGCGGATGACACCCAGCTCTATCTCTCTGGCAAACCGTCTTATTTTCCACCTTCATCCCTTATAATCAAATATCGGTTCTCTCTTAACTTTCTCAAATTAAAAAGTGCAAAAACTGAGGTGTTGCTTGTTGGTACCAAACCCTCAGTCCAAAACTGACAGCTTTTCTCTTTCTATTGACGACTGTTCCATTCATCCGTCTAAACAGGTCAAGAATCTTGGTGTCATCCTTGATAACACCCTATCTTTTGATTCTCACATCAATAACATCACCCGGTCTGCTTACTTCCGCCTACGCAACATTAACCGTCTCCGCCCTTCTCTTACTCCTCACGCCACTGCTGTTCTCGTTCATAGCCTTGTCACATCTTGTTTAGAGTACTGCAACTCTCTTCTCTTTGGTCTCATCTAAATCCCTCTGTAAGTTTCAGTTGTTCAAGAACTCAGCTGCCTGTATCATCACTAGAACTCCTTCTTCTCATCACATCAGTTCTGTCCTGCAGCAGCTTCACTGGTTACCTGTTTATTTTCGAATTGACTTGAAAATTTTGATGTTAACATTCAAATCCATCCACAATCTCGTCCCTCCATATTTGTCTGCCCTCATCCACAATGCTGTTCCCTCTCGCACCCTGAGATCTTCTTCCTCCCTCCACTTGTCTGTTCCCTTTACTCGTCTATTGTCCATAGGCAGGAGAGCATTCAGCCACTATGCTCTCCGGCTTTGGAACTCACTACCACCTGGGGGTTGGGAGGGGTTACACTTTATTTTAAGGTAACTACAGTGTAACTATTAAATTAACTACTGAGTAATATTAATTGATTACCTTTACTGGTCCCACTTTATATTAAGTGTCCTTAACTATATGTACTTACATCAAAAAATAAATACTATGTACTTACTGTGTTTATAATGTATTACATGTGGTGCTTTTGAGTTGGGATAGAGGTTGGGTTATGGACAGGTTTGGTGGTATGGGTAGGTTTAAGGGTGGGTTAAGGTGTAAGAGATGGTCAACAGTGTATTTAGAAATGTAATTACAGAATTAAATTACAGATGTATTTACATACAGGTATTTAATTAAGCATAAGTACACTGTAAATACATGTATTTACACAATAAGTACATTGTAACAAACTATTAATTCCTGTGTAAGTACATATTAGTTAAGGCCACTTAATATAAAGTGGAACCCATTTACTTACAATATATTTGGGGTTAGAATGTGGGTTAAATATAAGGTTACATGGAATCATGTATAATGGTCAAAAATCATTGTAATTACTATAGTAAGTGCATGAAACGTGTAAGTATGTCACCTTAAATTAACGTGTTACCTTAAGTTTTATAAGAATCTGACCTGGGCATTTTTTATTTTATTTTCATCTAGATTAATTAATTTATCATTAGTTGATTTTAATTTTAAAAAGGGGTTTTCACTCATTTTTCCAGAGATGGGTTCCGGCTGGAAGGGCATTCGCTGTTTAAAAACTTGCTGGAATAGTTGGCGGTTCATTCCGCTGTGGCGACCCCAGATTAATAAGGGATAGTTAAATAGGAACTAAGCCAACAAGAAAATGAATGAATGTTTTCACTCATCTCTTTTTTCTGTCCAG
Seq C2 exon
CTCCTCGGTCATCTCACTCTGTCTGGTAAAGTTGAAGATGACAGCATTCGCAGCCTGTTTTTTGGGGACTACTCCAAACCAGACTCGGCCAACAAACAATACGACGAGATCACAGATCTGAGCACATTAACAGAGGTGATGGATTTCTACCTCAGAGAGTTCAATAACATCAGCAAAGCACCCATGAACCTTGTCATGTTTCAGTTTGCCATCGAACACATCTCGCGGATCTGCCGTGTGCTAAAGCAAGACAACGGGCACCTGCTGCTGGTCGGCATTGGGGGATCAGGAAGACAAAGTGCCACCAAACTTGCCACTTTCATCAACGACTATGAGCTGTTCCAGATCGAACTGACCAAGAACTACAGCATGTCAGACTGGCGGGACAATCTGAAGCATCTGATGCTAAAATCAGGGATAGAGGGCAAGAAAACAACCTTCCTCTTTAGCGACAGCCAGATCAAGGATGAGGCCTTCGTTGAAGACATCAACATGCTTCTGAACACAGGAGATGTGCCGAACATCTTTCCGCTGGACGAGCGGGCGGACATCATTGAAAAAATGCAGGGAATTGCCCAAATGGAAGGAAAAAAGATTGACGTCACACCGCTCTCAATGTACAACTTCTTTATCGACAGGGTTAAAACCAATCTTCATATAGTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(4.1=22.9)
A:
NA
C2:
PF127802=AAA_8=PU(62.6=75.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGTGGATCCATGAGGTG
R:
ATCCGCGAGATGTGTTCGATG
Band lengths:
356-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]