BtaINT0050547 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59313665-59315126:+
Coord C1 exon
chr20:59313665-59313787
Coord A exon
chr20:59313788-59314910
Coord C2 exon
chr20:59314911-59315126
Length
1123 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTTGGTTTTTAATTTTAAGGAA
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTGACCAATCAGATGATATCTGCATGTAAAGCCTATATTACCAACAACGGAACTGCCTCGATCTGGAGCCAGCCACAGGATGTTGTTGTGGAAAAAATACTATCTGCAATTAAACTTAAGCAG
Seq A exon
GTAACAGTCAACTTAATAATATATTTAGAATTTAAAAATTATTTTTCCATTGTTTTTGCCAATATATCTTAAAAAAAGTATTTATTTATTTATCTGGCTGTGTCAGGTCTTAGTTGTAGCGTGCGGTATCTTCAGTGCATTCTGTGGGATCTTTCCTTGCTGTACACAGACTCTCTAGTTGCGACGTGCAGGCTTAGTTGCTCCAAGACATGTGAGATCCTAGTTCCCCTACCAGGGATTGAACCTGTGTCCTGCATTGCCGGACAGATTCTTAACCACTGGACCACCGTGAAAGCCCTGCCAGTTAAATAATTTATCAGTTATCATATCGTGTGGTTGCTTATGAAGTCACTTCAGTTGTGTCCAACTTTGTGTCCCTATGGACTGTAGCCCACCAGGTTCCTGTGTCCATGGATTCTCCAGGCAAAAACACTAGAGTGGGTTGCCACGCCCTCCTCCAGGGGGTCTTCTTGACCCAGGGGTCGAGCACGAGTCTTTTATGTCTCTTGCGTTGGCAGCAGGTTCTTTACTACTAGTGCCACCTGGGAAGCCCAGTTAAAAAGAATGGTAATCTTTCACTGTTAAGAAAAGTTGAATGTTAGTAAATCAGCCCCACAAATTTATTCACTTACTTTACCCTTTAGGGGACCTTCTATGTCCCAACACCACACAAGTACTAGATATACAAAGATGAAGTCGTTTTCCTTAAGCTTCTTATAGACAAACAGGGAGCTAGATGAAGAGCTAGGCTTCTCCTGACACAGTGAGACGCAGGTGGAAAGGCTGCATCTTTGAGTTGTATTATGAACCGTTAGGAGTTTGGACTCCCCTGGTGGTCCAGTGGTTAAGACTCCAAGCTTGCAGTGCAGGGGGCACAGGTTCAATCCCTGGTCGGAGAAGTTCTGCATGCCTCATGGTAAAAAAAAAAAAAAAAAAAAAGGAGTTTTCTAGGTTAGGGGTCAGGAAAAGATGACATCCCAGGTTGATGAGTGAGTTGCTCCAGAGGTATGAAACGGAAAGATTTTGTAATTCTACCCTAAATTTGCTATCACCTTCACTTAAGAGAATAAGGCTGATGTCTTTGTTGGGTTCCCTTTCTTGTATTTTGGTTTTTAATTTTAAG
Seq C2 exon
GAATACCAGCACTGCTTTCACAAGACAAAACAAAAGCTTAAACAAAATCCAAGTGAAAAACAATTTGAATTCAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACAGACGTCTTGCCAAGATAATGGATATCTTTACAACCTTCAAGACATACTCAGTACTGCAAGATTCTAAAATTGAAGGGCTGGAAAACATGATCACTAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATCTGCATGTAAAGCCT
R:
GTATTTAGTGATCATGTTTTCCAGCC
Band lengths:
326-1449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]