MmuINT0050892 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28168266-28169789:+
Coord C1 exon
chr15:28168266-28168388
Coord A exon
chr15:28168389-28169573
Coord C2 exon
chr15:28169574-28169789
Length
1185 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCTTTGCTCTTGACCCTCAGGGA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTGACAAATCAGATGATATCTGCATGTAAAGCCCATATCACCAACAATGGGACTGCCACCATCTGGAGCCAGCCTCAGGAGATTGTTATGCAAAAAATAGCAGCTGTGATTAAGCTCAAGCAG
Seq A exon
GTAAAGGTACTGGAGCTCCGCAGTGTGCTCCCCCCTCCCCTGTGTCTTGTTCTTTGTGTTACGTTTCTGGGACCACATTAAATCATACAACAATGGCGTTTGTGTTTGCTAAATGGAATAGTAGTTATTTTCTTTTTGCAAAATAACTTCACTGCTAAGAAAGTTGAGTGTTAAAAGGATTGCCGAGAAAGTTTCATTTCTTCTATTGAAGTTCTGAGATACACTGGTAACTAATCTGAGATAGTTTTAAGTATCATATAGGCCAGCGAGGAGGTGGAATAAGGTGATTCTGTTATTGAAATAGTGGGACCAAGGAGCTTGAGTTGCACTAAAGTAGTAGTTTGTTGGATTAGAAGACGGGGGAAGCATAAACAACCACCAAACCCAGACACTATTGCGGATGCTAACAAGAGCTTGCTGACAGGAGTCTGATAAAGCTGTCTCCTGAGAGTCTCTGCTAGTGACCGACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGCACAGGGTCGCCAATGAACGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTTTTCAGCCCCCTAGGAGGAACAACAATATGAACTAACCAGTAACTCCAGAGTTCCCAGGGACTAAACCATCAAGTAAAGTGTACATATGATGGGAATCATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTAGTCAGTCATTAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTGTAGGGGAATGCCAGGATCAGGAAGCAGGAGTCGGTGGGTTGGTGAGCAGGGGGAGGGGAGAAGGGATAGGGGATTTTTGGAGGGGAAACTTGGATAAAGGGATAATATTTGAAATGTAAATAAAGAAAATAGCTAATGAAAAAAGAAGATGGGGAAAGATAATGGTTCAGACTGATGGCTAAGTGGAAAAGAGTACAATTATGAGAAGATTTTCAGTCTAACTTTGTCACCACTTTCATTTGAGAAATAGATGAACCCCTCCCTTTCCCTGCTCCTCCCTTCCTTCCTCCCATTGTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTTCCCCTCCTCCCTTTTGTCCATGTTAGGGGTTGAGCTCAGGATTTGTTCTCTACCTAAGTCCTGCTTTCCTTATATTCTTTGCTCTTGACCCTCAG
Seq C2 exon
GGATACCAATCCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGCGAAAAACAATTTGACTTTAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACCGACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGCGACTAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCTGCATGTAAAGCCCA
R:
CTGGTACTTAGTCGCCATGTCT
Band lengths:
326-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: