HsaINT0049736 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13913743-13914642:-
Coord C1 exon
chr5:13914520-13914642
Coord A exon
chr5:13913959-13914519
Coord C2 exon
chr5:13913743-13913958
Length
561 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATTTTTCTTTTGATTTTAAGGAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTGACAAATCAGATTATATCTGCATGTAAAGCCTATATTACCAATAATGGAACCGCTTCCATCTGGAACCAGCCACAGGATGTTGTTGAAGAAAAAATACTATCTGCGATTAAACTGAAACAG
Seq A exon
GTAATGGTCAGTTTAGTATTTAGATGTTCTATTCTTTTTATCTTATTTTTGTTGAGACCATCTTAAATCATTTTGTAATTATTATATCATTGGTTGATAAAAAGAACAGTGATTCTTAACTATGAAGAAAATGGAATGTTAATATACCTTCCCAGGAAATTTATTCACCTTTTTGTACCCTCCTTGGGAGCCTACTATGTCCTGATATCACAGTAAGTACTAGAGATACAAAGACAGCTAATATGAGGTAGTTTTCCTTAAGCATCTTTAAGATGAATGGAGAGAGAGTCATAGAAGGATGCTATTACCAAAACCATGGGACCAAGATGGGAAAGCCACACCTTTGAGTTGCATCGTGAGTAACCCGATTAGAATCTAGAATTGCTAGATTAGAGGAGGTGAAAAGATGATTTTCCAGGCTGATGAGTGAGTACAAGCAAAGGCATGAAACTATGAAAAGGCTTACAATTCCATCCTAATTTTGCTGTCGCCTTCACTTAAGAAAATAAAGTTGATACCTTTCTTGTTCCCTTTGTTGTATATTTTTCTTTTGATTTTAAG
Seq C2 exon
GAATACCAGCTCTGCTTTCACAAGACAAAACAAAAGCTTAAACAAAATCCAAATGCAAAACAATTTGATTTTAGCGAGATGTATATTTTTGGAAAATTCGAAACTTTTCACCGACGCCTTGCCAAGATAATAGACATCTTTACAACCCTCAAGACGTATTCAGTCCTGCAAGATTCCACAATTGAAGGGCTGGAAGACATGGCCACTAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCATGTAAAGCCTATATTACCA
R:
GGTATTTAGTGGCCATGTCTTCCA
Band lengths:
319-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development