RnoINT0048945 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80981646-80982804:+
Coord C1 exon
chr2:80981646-80981768
Coord A exon
chr2:80981769-80982588
Coord C2 exon
chr2:80982589-80982804
Length
820 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTTTGCTCTTGACTGCCAGGGG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTGACAAATCAGATGATATCTGCATGTAAAGCCCATATCACCAACAATGGGACTGCCACCATCTGGAGCCAGCCTCAGGACATTGTTATGCAAAAAATAGCAGCTGCGATTAAACTTAAGCAG
Seq A exon
GTAATGGTACTGGAGCTCAGCAGTGTGCCTCTGTATCTTGTTCTTTGTGCTACGTTTCTGAGATTGTATTAAATCATTTGACAATGATATTTCTTGGTTGTCAAACAGAATAGTAGTTATTTTCTTTTTACAAAATAACTTCCCTGCTACGAAAATTGAGTGTTAATAAGCATGCCGAGAAAGTTTATTCATTTATTCTGTTAAAGTTCTGAGATACACTGGTAACTAATATTAGATGGCTTTCAGTATCATATAGATCAGTGAGGAGATCGAATAAGGTGATTCTGTTACTGAAATTGTGGGACCAAGGAGGACGAGACACAGGTTTGAGTTGTACTAAAAAGTAGATTGCTGGATGGGGAAAGATAATGCTTCAGACTGATGGCTATGCAAAGGAGTACAATTACGAAAAGATTTTGCCATCACCTTCATTCCGGAAATAGATGAACCCTGCTCCTCCCTCCCTCTTCCTGCTCCTTCTTCCCTCCTCTTGCCCCTTCTTCCCTCCCTTCTTTCCCTGCTCCTCCCTCTCTCCCTTCCTTTGCTCCTCCCCCTCCCTTCCCCCTGCTCCTTCCTCCTCCCTGTGCTCCTCCCTCCCTCCCCTTGCTCCTTCTTCCCTCACCGTGCTCCTCCATCCCTTCCCCTGCTCCTCCCTCCCTCCACCCTTCCCCTACTCCTTCCTCTCTCCATCCTTTTCTCCCTCCTCCTTTCCCTCTCTCTCCCTCCCTTTCATGCTGGGGTTGAACCCAGGTTTTGTACTCTTAGATATGTTCTCTACCGGAGTCCTATTTTCCTTATGTTCTTTGCTCTTGACTGCCAG
Seq C2 exon
GGGTACCAGTGCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGTGAAAAACAATTTGACTTTAGTGAGATGTATATATTTGGAAAATTTGAAACTTTCCACCAACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGTGACTAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCTGCATGTAAAGCCCA
R:
CTGGTACTTAGTCACCATGTCTTCC
Band lengths:
326-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]