BtaINT0050549 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59316865-59322037:+
Coord C1 exon
chr20:59316865-59316972
Coord A exon
chr20:59316973-59321951
Coord C2 exon
chr20:59321952-59322037
Length
4979 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
CAGACTTCATTCTGTTTCAGAAA
3' ss Score
7.9
Exon sequences
Seq C1 exon
GGTATTGTTGCTACCATAAAGAAAAAGGAGTATGATTTCTTAGACCAGCGGAAAATGGAATTTGAGCAGGATTACGAAGAGTTTTGCAAGCAGATTAATGACCTTCAT
Seq A exon
GTAGGTTGTATAATAACATTCTTGTTGACAGTCTGGTGTTTACTTTTTCCATTCTGTGTCATGCTGCTAATCATTACCCATTCAGAAGGAAGAGGCATCTTCATCACGGAGGTGACCGACAGAGGGCTTGGCCTGCATTTTATGATTTCAGATGAATAATTGAAGGTTCTTTCTCCTGGATTAAAGGTTCATAAATACAGCTTTGGATAACGAGCTGTAATCACAGATTTCTGCATGTGTTTCATTTTAGATCTTAGAAAATTAACTGTTATCCTCTGTTGAAACATAGTGTTATTAGAATATAGAAATTAGTTTCCGTTTGTTTGTTACTTTATAGCAGTGATTATGACCAATGATAGCTTGAGCAAATGGTCATCGATGTTCGGCAGATCCCAAGGGCAGGAGACTAGCTGGCCTTGAAACAGTGGTACCAGGGCTGACTCAGCACCTTGACCCAACTTGGTCTTAAAGCCCTGTTCTCTTCATTCTCCTTCCCTTCCTCCTGCTTTCCCCACTCTCTCCGGTCACTGCAGGTCAGCGCACAGGAGCAGGTTATGGCCATCAGAAGCTTCTGAGGACATGCCATGGACCCACTCTTAGCTCCCAATGTCTAAGGACGGGTTGGGTTGGTCAGGGTTCCAGTGTTGTGCCTCATTACTGTGGGGTCATATGGTAAACGCAGAGGACGTGGGACCCCCTGGCATGGCTGGGTGTATTTATTACCAGATGAGAAGAGCCAGGGAGGGTAAGTTTGGGAGACACACTAATGGATGTCCACCTTAATCAACGTGCAGACTTCTTCCCATGTTTTCTGACGATAAAATGAAAATGGCTGTTCTGTTCCTTCTTTTCCAGAAATTTTGGCCTGAAATACGCTTGTACACTTCAAGGGAGAAAGAGCTCTGAGTCATTTTTGGAAGGATGGGTTCAGTGTAGAAGGCATTATAATAAAACTTGCTAGTTCTGTATGTCAGGTCTGTTCTAGGCACTTTATAGGTGTTAATTCATTTAATACTCACAATAATCTGATAAAGTGTGTATTCTTATTACACTGTTTCTGGAAAGGAGGAAACTGAGGCATGGTGAAGTTAAGTGACTTTCCCACAGTCACAGAGGTGTTGACTGGTAGGCAGTCTGGCTCTAGGATTCAGGTTTTTTTTTTTTTTTTTTACTGGTTTACAATTTTTTAAAATTAATTTATATATTTTAATTGGAGGCCAGTTACTTTACAATATTGTGGCGGTTTTTGCCATATATCAACATGAATCAGCCATGGGTGTACATGTGTCCCACCATCTTGATTCAGGTTTTTAACCATTATTTTACAAGACAAATTTCAGGTGATGGAAAGATAGAGCGCTTGTAATAATATAAGCAATGAGCTCTTTGGGGGCTGACTCAGACATGAGATCTGTGGATCTTGATCTCTCATGGGAAATGGATGAGCAACGGCAGATCCTGAGTGTGTGCGTCATGGTCAGTGTTGATCCGTCGTCTTTGTGTGTGTGTCCTAGCAGTTTCTGATCGCACAGCACTGGAGGAGTTTGTATGCTGGATGCAGGTAGATGGTGAACACCTTGAGGGCAGGAACTGTGTTCATTCCTATCTATGTCTCCAGGCCCTAGCGGATGGGACTTTATATAACTGGAGACCAAAGGATGTTTGCTGGATTACTGTATGATTTGTGGTAAGAACTAGGCCCTGGTGGCTCAGTGGAAAAACGCCCGCCTGCAATGCAAGAGCTGCAGCTTTATCTCTGGGTCAGGAAGATCCCCTGAAGAAGGGAATGGCTGCCTACTCCTGTATTCTTGCCTGGAGAATCCCCATGGACAAAGGAGCCTGGAGGGCTACAGTCCAAGGGGTGACAAAGAGTCAGACACAACTTTGCTGCTAAACCACCACTACCACCATCAGACTCTGTTAAGTGAAGTAGGACAGGCAGAGAAACACAACTGTGTGATATCACTTATATATGGAATCTAAAAACCACAGTAAACTAGTGGATATAAGAAAAGAGAAGCAGATTCATAGATATAGAGAACAATTTCCCTACTTACTAGCAGTGGGGCGAGGGAAGGGGAGGCAAGGTAGAGGTAGGGGACTAAGAGGTAGAAGCTATTAGGTATAGAATAAACTACAAGGATATATTGTACAACATGGGGAATATAGCCAGTATTTTTCAATAACTATAAATGAGTATAACCTTTAAAAAAATGGAGTATAACCTGATGTTGAAGCCGAAACTCCAACACTTTGGCCACCTGATGCGAAGAGCTGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCAGGAGAAGAAGGGGACGACAGAGGATGAGATGGTTGGAAGGCATCACCGACTCAATGGACATGAGTTTGAGTAAACTCCAGGAGTTGGTAATGGACAGGGAGGCCTAGTGTGCTGCAGTCCATGGGGTTGCAGAGAGACGGGCACGACTGAGTGACTGAACTGAACCGAACCTTTAAGAAAATCACATCCAATTCCCACATATATTAGGACATCAGATTTGGAAAAAATCACAGCTTTTACTTTAAATGGCACATAAACTAAATGACACAATGAAATGTTTGTTTTAAGAAAAAATGGAAAAGAAAGATAATTATGGATATGATAGCAAAGCATAAGAACTAGATTTATTGTAATTAAACATGCATTGTCATTAAATTAATTATGTAAATAAATTAATGTAATGTAATTAAATATCAATAACCTCAGATATGCAGATGATACCACCCTCATGGCAGAAAGTGAAGAACTAAAGAGCCTCTTGATGAAGGTGAAAGAGGAGAGTGAAAAAGTTTGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGAAAACAGTGGCTGACTTTATTTTTCTGGGCTCCAAAATCACTGCCATCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGTTATGACCAACCTAGACAGCATATTGAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATGTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGAATGTGAGAGTTGGACTATAAAGAAAGCTGAGTGCCTAAGAACTGATGCTTTTGAACCATGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATTCTGAAGCTGAAACTCCAAAACTTTGGCCACCTGATGCAAAGAGCTGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAGGGTAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGGATCACCGACTCAATGGACATGGGTTTGGGTGAACTCCAGGAGTCGGTGATGGAAGGGAGGCCTGGCGTTCTGCAGTTCATGGGGTCTCAAAGAGTCGGCACACAACTGAGCGACTGAACTGAACTGAACTTAACTGAAACATGCATTGACTGTACATTAAATGCATATTAGGCTTCTATGCTGTAGGTTATGGGTACAGAAGTAGATAGAGTTGATTGGCCCTTAAAGATCACATCTGACATGTAACATGATTGAAATATAAGTACATATATGTTAGAACAAAGTAATGAATGTATCTTAAAAATGGCAAATAGTGGCTAAAATGACTAATTATAAAAGTATAATATTCTGATATTGTACCAGCAAGTGAGGCTTCAAAGATAAGTTGACATGTTCCAAACAAGTCCTAGAGAACTTATTTTTTAATATAAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATTGACATGAATCAACCATGGGTGTAGATGTGTTCCCCATCCTGAACCCCCCTCCCACCGCCTTCCCCGTCCCATCCTTCTGGGTCATCCCAGTGCACCAGCCCTGAGCAACCTGTCTCATGCATTGAAACTGGACTGGAGATTTGTTTCACATATGATAATATACATTTATAAGGAGGACAGGTGGATTCTTTACCATCTGAGGCACCAGGGAAGCCCCGTAAAGATTTACTGTGTCCTAAGTTAGAGAGACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCTTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGAGTCGGACACAACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGAAGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGTAGCAGTAGCAAGTTAGAGAGATGGTCAGAGCAACCTGCTGGACTACAGTCCACAGCATCACAAAGTGTCGGACATGACTTAGCTACTGAGCACAATAACTAGAGATACTAAGCATCTTTTCATGTGCTTGTTGGCTATTTGTGTATCTTTGTATAAATTAAAGGGAGGGAGTGGAAGCGTTGTGAATGCTCTAGTTCTGCACAGTTTATACTTGGATACTTTTATATAGTGATAACCTCTGAGGGTTTATTTAGGTAGGCTAACTGTACAATTCTTCAGTTCAGGAAGATTTCCTGGTCCTAAGACATGATGTTTGCCGTAGAAATACATGGCCCAGTATCCCTGGGTCCTGCGCCAACCCCCTGACTGCTCTGGCTCTCAAGGCCCTCTTTGTCTGGCTTCTGGACATTTATCTTCCTTTAAGCTTAGATGAGCATTATATCTGCTGCTGTATTTTGTCCTGTAGGGTGCGTGTTTGTAGAGAATGGGGAACTCTTTTATCTTGTTGCTAAATAGGATTTCTTTGCAATGTTAACCCATTGTTCATCGTCAGACTTCATTCTGTTTCAG
Seq C2 exon
AAAGAGTTGCAGAAGTTCATGGATGCTACATTTGAAAAGATTCAAAACACAAATCAAGCTCTAAGTATGTTAAAGAGATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
NA
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]