GgaINT1011555 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76614985-76615859:+
Coord C1 exon
chr2:76614985-76615092
Coord A exon
chr2:76615093-76615773
Coord C2 exon
chr2:76615774-76615859
Length
681 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
AATTATTTGCTCTCCTTCAGAGT
3' ss Score
9.07
Exon sequences
Seq C1 exon
AGTATTGTTGACATCATGAAGAAAAAGGATTACAATTTCTTGGATCAACGGAAGGCTGATTTTGACCGAGACTATGAAGAGTTTTGCAAAGAGATAAATGATCTACAT
Seq A exon
GTAGGTTTTATCAATCAAAGAATTGAATTTATTAATAATTCCTGAAAAAAAAACCCAGTACCTCTGAGTTACCACAAAAAACAAACAAACAAACAAACAAAAAAACCCTCAAGATTTCTCTTCTGAAATTGAGAAGTAACTTGAATGCCATTTATTATCTGGCATTTAAACCATGGAATAGGAAAGGATTTCTTGTTATTCTATTTGAATGTAATACTCGGAAGACTGACATAAAAATGCTTGATTTTGTTGCTTGAATGGAAATATACAGTACAAATGGCTTAGACAATTAACTTTCCCTTTCCCTTTGTTCTGATATCACAAAATGATGGAAGGAATGTGTAGGGGTATAAGTGCAGATTTAAATTAAACACTTTACTGGCTTTGTCTGCCGAAGAGTTAAGCCAGCATTCTTTTAGGGTTGCAGTATGGTGGTACCTTTGACAGTTCAAAAGCCTTTTCTGGTTGCATAGCTACAGAGGGAACAGAAGAAGGAAGTGCCTTGAATGTTGACTGTATTTTGTTTGAAATGGATGGGAAAGAGAGAAAATTGATACTCACTGAGTAACTTTCACATAAACTTTGTTCTAATATAATACATTATAAATCATGTAAAATCACACCTGGTATATTTGAGGTATGTACCTTATGTCAACTGTAGAATTATTTGCTCTCCTTCAG
Seq C2 exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
NA
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGACATCATGAAGAAAAAGGA
R:
TTTCTTCAACATACACAGTGCTCT
Band lengths:
182-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]