GgaEX6020608 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76612721-76615859:+
Coord C1 exon
chr2:76612721-76612936
Coord A exon
chr2:76614985-76615092
Coord C2 exon
chr2:76615774-76615859
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTAAAACTATTTAGAGT
3' ss Score
4.67
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGTATCAAAATTGCTTTCACAACATGAAAAAGAATCTGGAGCAAAATCCAGCTGAAAGACAGTTTGATTTTAGTGAGGTGTATATATTTGGAAAATTTGAAACTTTTAACCGACGTCTGGTAAAGATAATAGATGTTTTCAATACTGTGAAAACCTATTCAGTTCTACAAGAGTCGAAGATAGAAGGTTTGGAAGAAATGATTGCAAAATATGAG
Seq A exon
AGTATTGTTGACATCATGAAGAAAAAGGATTACAATTTCTTGGATCAACGGAAGGCTGATTTTGACCGAGACTATGAAGAGTTTTGCAAAGAGATAAATGATCTACAT
Seq C2 exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.7=100)
A:
PF083857=DHC_N1=FE(6.3=100)
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAAAATCCAGCTGAAAGA
R:
ACAGTGCTCTTTCAGTGTTCGG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]