GgaEX6020608 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78518653-78521793:+
Coord C1 exon
chr2:78518653-78518868
Coord A exon
chr2:78520919-78521026
Coord C2 exon
chr2:78521708-78521793
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTAAAACTATTTAGAGT
3' ss Score
4.67
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGTATCAAAATTGCTTTCACAACATGAAAAAGAATCTGGAGCAAAATCCAGCTGAAAGACAGTTTGATTTTAGTGAGGTGTATATATTTGGAAAATTTGAAACTTTTAACCGACGTCTGGTAAAGATAATAGATGTTTTCAATACTGTGAAAACCTATTCAGTTCTACAAGAGTCGAAGATAGAAGGTTTGGAAGAAATGATTGCAAAATATGAG
Seq A exon
AGTATTGTTGACATCATGAAGAAAAAGGATTACAATTTCTTGGATCAACGGAAGGCTGATTTTGACCGAGACTATGAAGAGTTTTGCAAAGAGATAAATGATCTACAT
Seq C2 exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.7=100)
A:
PF083857=DHC_N1=FE(6.3=100)
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAAAATCCAGCTGAAAGA
R:
ACAGTGCTCTTTCAGTGTTCGG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]