GgaEX1020198 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78516825-78521026:+
Coord C1 exon
chr2:78516825-78516947
Coord A exon
chr2:78518653-78518868
Coord C2 exon
chr2:78520919-78521026
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCGAACTTCTTTATTTTTAGGAG
3' ss Score
8.24
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTCACCACTCAGATGATCACAGCATGTAAATCTTATATCACTAACAATGATACCGCCACCATCTGGAATCAACCTCTGGACAGCGTTATGGAAAAACTACATGCAGCCATTCGGCTTAAGCAG
Seq A exon
GAGTATCAAAATTGCTTTCACAACATGAAAAAGAATCTGGAGCAAAATCCAGCTGAAAGACAGTTTGATTTTAGTGAGGTGTATATATTTGGAAAATTTGAAACTTTTAACCGACGTCTGGTAAAGATAATAGATGTTTTCAATACTGTGAAAACCTATTCAGTTCTACAAGAGTCGAAGATAGAAGGTTTGGAAGAAATGATTGCAAAATATGAG
Seq C2 exon
AGTATTGTTGACATCATGAAGAAAAAGGATTACAATTTCTTGGATCAACGGAAGGCTGATTTTGACCGAGACTATGAAGAGTTTTGCAAAGAGATAAATGATCTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCACTCAGATGATCACAGC
R:
TTGCAAAACTCTTCATAGTCTCGGT
Band lengths:
212-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]