MmuEX6053087 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28168266-28172519:+
Coord C1 exon
chr15:28168266-28168388
Coord A exon
chr15:28169574-28169789
Coord C2 exon
chr15:28172412-28172519
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTCTTGACCCTCAGGGA
3' ss Score
9.18
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGACAAATCAGATGATATCTGCATGTAAAGCCCATATCACCAACAATGGGACTGCCACCATCTGGAGCCAGCCTCAGGAGATTGTTATGCAAAAAATAGCAGCTGTGATTAAGCTCAAGCAG
Seq A exon
GGATACCAATCCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGCGAAAAACAATTTGACTTTAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACCGACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGCGACTAAGTACCAG
Seq C2 exon
GACATTGTTGCTGCCATAAAGAAGAAAGAGTATAACTTCTTAGATCAACGGGAAATGGATTTTGACCAAGATTATGAAGAGTTTTGCAAGCGGATTAATGAGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATCTGCATGTAAAGCCCA
R:
TGAAGCTCATTAATCCGCTTGCA
Band lengths:
220-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: