BtaEX6076057 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59313665-59316972:+
Coord C1 exon
chr20:59313665-59313787
Coord A exon
chr20:59314911-59315126
Coord C2 exon
chr20:59316865-59316972
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTTTTTAATTTTAAGGAA
3' ss Score
8.89
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGACCAATCAGATGATATCTGCATGTAAAGCCTATATTACCAACAACGGAACTGCCTCGATCTGGAGCCAGCCACAGGATGTTGTTGTGGAAAAAATACTATCTGCAATTAAACTTAAGCAG
Seq A exon
GAATACCAGCACTGCTTTCACAAGACAAAACAAAAGCTTAAACAAAATCCAAGTGAAAAACAATTTGAATTCAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACAGACGTCTTGCCAAGATAATGGATATCTTTACAACCTTCAAGACATACTCAGTACTGCAAGATTCTAAAATTGAAGGGCTGGAAAACATGATCACTAAATACCAG
Seq C2 exon
GGTATTGTTGCTACCATAAAGAAAAAGGAGTATGATTTCTTAGACCAGCGGAAAATGGAATTTGAGCAGGATTACGAAGAGTTTTGCAAGCAGATTAATGACCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATCTGCATGTAAAGCCT
R:
TGAAGGTCATTAATCTGCTTGCA
Band lengths:
220-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]