MmuEX6053087 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28238511-28242764:+
Coord C1 exon
chr15:28238511-28238633
Coord A exon
chr15:28239819-28240034
Coord C2 exon
chr15:28242657-28242764
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTCTTGACCCTCAGGGA
3' ss Score
9.18
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGACAAATCAGATGATATCTGCATGTAAAGCCCATATCACCAACAATGGGACTGCCACCATCTGGAGCCAGCCTCAGGAGATTGTTATGCAAAAAATAGCAGCTGTGATTAAGCTCAAGCAG
Seq A exon
GGATACCAATCCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGCGAAAAACAATTTGACTTTAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACCGACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGCGACTAAGTACCAG
Seq C2 exon
GACATTGTTGCTGCCATAAAGAAGAAAGAGTATAACTTCTTAGATCAACGGGAAATGGATTTTGACCAAGATTATGAAGAGTTTTGCAAGCGGATTAATGAGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'1-16,'1-9,10-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATCTGCATGTAAAGCCCA
R:
TGAAGCTCATTAATCCGCTTGCA
Band lengths:
220-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types