RnoEX6009085 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80981646-80985676:+
Coord C1 exon
chr2:80981646-80981768
Coord A exon
chr2:80982589-80982804
Coord C2 exon
chr2:80985569-80985676
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTCTTGACTGCCAGGGG
3' ss Score
7.32
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGACAAATCAGATGATATCTGCATGTAAAGCCCATATCACCAACAATGGGACTGCCACCATCTGGAGCCAGCCTCAGGACATTGTTATGCAAAAAATAGCAGCTGCGATTAAACTTAAGCAG
Seq A exon
GGGTACCAGTGCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGTGAAAAACAATTTGACTTTAGTGAGATGTATATATTTGGAAAATTTGAAACTTTCCACCAACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGTGACTAAGTACCAG
Seq C2 exon
GACGTTGTTGCTGGCATAAAGAAGAAGGAGTATAACTTCTTAGATCAACGGAAAATGGATTTTGACCAAGATTATGATGAGTTTTGCAAGCAGACGAATGAGCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATCTGCATGTAAAGCCCA
R:
GTGGAGCTCATTCGTCTGCTT
Band lengths:
221-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]