HsaEX6097354 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13911495-13914751:-
Coord C1 exon
chr5:13914629-13914751
Coord A exon
chr5:13913852-13914067
Coord C2 exon
chr5:13911495-13911602
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTTGATTTTAAGGAA
3' ss Score
8.74
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGACAAATCAGATTATATCTGCATGTAAAGCCTATATTACCAATAATGGAACCGCTTCCATCTGGAACCAGCCACAGGATGTTGTTGAAGAAAAAATACTATCTGCGATTAAACTGAAACAG
Seq A exon
GAATACCAGCTCTGCTTTCACAAGACAAAACAAAAGCTTAAACAAAATCCAAATGCAAAACAATTTGATTTTAGCGAGATGTATATTTTTGGAAAATTCGAAACTTTTCACCGACGCCTTGCCAAGATAATAGACATCTTTACAACCCTCAAGACGTATTCAGTCCTGCAAGATTCCACAATTGAAGGGCTGGAAGACATGGCCACTAAATACCAG
Seq C2 exon
GGCATTGTGGCAACCATAAAGAAAAAGGAATACAATTTCCTAGACCAGCGGAAAATGGATTTTGACCAAGATTACGAAGAGTTTTGCAAGCAGACTAATGACCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(12.7=100)
C2:
PF083857=DHC_N1=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCATGTAAAGCCTATATTACCA
R:
TGAAGGTCATTAGTCTGCTTGCA
Band lengths:
212-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)