MmuEX6053086 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28169574-28175502:+
Coord C1 exon
chr15:28169574-28169789
Coord A exon
chr15:28172412-28172519
Coord C2 exon
chr15:28175417-28175502
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTATCTTCTGTCTATTTCAGGAC
3' ss Score
13.44
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GGATACCAATCCTGCTTTCAGGAGACAAAACAAAAGCTTAAGCAAAATCCAAGCGAAAAACAATTTGACTTTAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACCGACGTCTGGCCAAGATAATGGACATCTTCACTACCTTCAAGACATACTCAGTCCTGCAAGATTCCAAAATAGAGGGGTTGGAAGACATGGCGACTAAGTACCAG
Seq A exon
GACATTGTTGCTGCCATAAAGAAGAAAGAGTATAACTTCTTAGATCAACGGGAAATGGATTTTGACCAAGATTATGAAGAGTTTTGCAAGCGGATTAATGAGCTTCAT
Seq C2 exon
AATGACCTGCAGAGGTTCATGGACATCACATTTGAAAAGATTCCAAGCACGAGGCAAGCTCTAAGCACGCTGAAGAAATTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.7=100)
A:
PF083857=DHC_N1=FE(6.3=100)
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTAAGCAAAATCCAAGCGA
R:
TTAGAGCTTGCCTCGTGCTTG
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: