BtaEX6076056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59314911-59322037:+
Coord C1 exon
chr20:59314911-59315126
Coord A exon
chr20:59316865-59316972
Coord C2 exon
chr20:59321952-59322037
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCGTACTATTTCAGGGT
3' ss Score
9.31
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAATACCAGCACTGCTTTCACAAGACAAAACAAAAGCTTAAACAAAATCCAAGTGAAAAACAATTTGAATTCAGTGAGATGTATATTTTTGGAAAATTTGAAACTTTCCACAGACGTCTTGCCAAGATAATGGATATCTTTACAACCTTCAAGACATACTCAGTACTGCAAGATTCTAAAATTGAAGGGCTGGAAAACATGATCACTAAATACCAG
Seq A exon
GGTATTGTTGCTACCATAAAGAAAAAGGAGTATGATTTCTTAGACCAGCGGAAAATGGAATTTGAGCAGGATTACGAAGAGTTTTGCAAGCAGATTAATGACCTTCAT
Seq C2 exon
AAAGAGTTGCAGAAGTTCATGGATGCTACATTTGAAAAGATTCAAAACACAAATCAAGCTCTAAGTATGTTAAAGAGATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.7=100)
A:
PF083857=DHC_N1=FE(6.3=100)
C2:
PF083857=DHC_N1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCACTGCTTTCACAAGA
R:
TGTAGCATCCATGAACTTCTGCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]