BtaINT0050586 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59421979-59423224:+
Coord C1 exon
chr20:59421979-59422121
Coord A exon
chr20:59422122-59423089
Coord C2 exon
chr20:59423090-59423224
Length
968 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTCTCAATTTCTACTGTAGGCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCAAATGGATGCACTGGAACACATGTACTGAGGAATATGTCTATCCATCTAACACCACCCCAGAATATGGCTCCATCCTGGTGCCAAATGTTGACAACGTGAGAACCGACTTCTTAATTAAAACCATTGCTAAACAGGGCAAG
Seq A exon
GTATGGCACTTTCAGTTTTATTTAAAATGACACATTTGGAAATGTCACTTGAAAACATGGAGCATCTTGCATTCATTTTAGAATGCTTTTTATTGCTGTTTACAATAAATAAAAATATTACCCAAATTAGTATACTACTTCTTTTATTATTCCTCAGTAACAGTATTAGGGACTTTCCAGGTGACTCAGTGGTAAGGAATTCACCTGCCAATGCAGGAGATGCAAGAGACTTGGGTTGGATCCCTGGGTTGGAAGATGCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATTCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAAAGAGTCAGAGATGACTGAGCATGTATGCAACAATATTAGAGTTGAATAGCTTTAATTCATAATTAATTTTTTCATATATATATATATATATATATATATATATATATATGGCGAGAGAGACAGACAGAGAGAGAATGTGAGTTTTGACTTGTTTCTCCAAAGAGAAATCCTCTCTTTTAGTTATTGTACTATTTTGCCAGGGCTTCTGTAACAAAATGCCACAGCCTTGTGGCTTAATCAGCGCACATTTCTTTCTGTACGGTTCTGGAGGCTTGAAGTTCAGGATGAAGGTGTTGGCTGGTTTAGTTTTTCTGGGGACCTCTCTTTCCTGGCTTCTGGGTGGTTATCTTCTCACTGTGTCCTCCCTCGTCTCTGTGTGTGCATGCCTGTTGCTTCTCTGTGTAGCACAATGTCTTCTTCTAAGGGTACCCGTTAGACTGATAAGAGCACACCTCAATAGTCTCATTTTAGCATAATCATCTTTTTCAAGAATCTATCTCCAGACACAGTCACCTTCTGAAGTACTGGGAGTTAGGGCGTCCTCATATCCACAGCTGAGCCCATGACAGTCATCTTATTGTATTTCTTTTATTTCTTTCTCAATTTCTACTGTAG
Seq C2 exon
GCTGTGCTGTTAATTGGTGAACAAGGAACAGCCAAGACAGTCATAATCAAAGGATTTATGTCGAAATATGATCCTGAAAGCCACGTGATCAAGAGTCTGAACTTTTCTTCTGCAACCACCCCACTGATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(10.4=58.3)
A:
NA
C2:
PF127752=AAA_7=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGGATGCACTGGAACAC
R:
CTGAAACATCAGTGGGGTGGT
Band lengths:
278-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]