MmuINT0050931 @ mm10
Intron Retention
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28349773-28350711:+
Coord C1 exon
chr15:28349773-28349915
Coord A exon
chr15:28349916-28350576
Coord C2 exon
chr15:28350577-28350711
Length
661 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCTAAACTCCTTGATTTTAGGCT
3' ss Score
6.31
Exon sequences
Seq C1 exon
GTACTTGGAGGCATTGGAGCCTGTGTACCCCAGAATATGTGTACCCACCTGACACCACCCCAGAATATGGATCTATCCTTGTGCCAAATGTGGACAATGTGCGGACCGACTTCCTAATTAAAACCATTGCCAAACAAGGCAAG
Seq A exon
GTATGACTTTTAAACCATTGTTAAAAAGAGTCTACTCTAAAGGTCATATGAAAATACAAAAGAACCTTGCAGTTATTTCACATTACTTTGTGTTTCTGCTTAGAATAAGTGAAGGTGTTACCTAAATGACTGAACTGCCTTTGTTATTTCAAAAGGACAACCTGATGTGCGGAACACTCCTAAGTCTCAACTGAGATGAATTTTGACTTGCTTTTGTTAAGATAATTCTTTCCCTTCTGGTTACTGACTTAGTTTGCTGTGGCTGTTCTAACAAAATATCAAAGCTTAGCGGTTTAAACCATGACAGTTTACTTCCTCAGTGCTGGAGGCTGAAAGCCCAGGATCAAGGTTTTGACGAGGTTCATTTGTTCATAGTCCCTGCTCCTCGACTTAGAGATGGTGTCCCCTTCCTGTCTTCCTGAGGCGCTTTTCTGTGCGCACGCATCTCTGGTGTTTGTGTGCCTAGGTATTTTGCTTCTATAAAGCCATCATTAGGCAGGATCCTCTGGGTGCCACCTCTGCAGAGCCCCTTGCTCTAGGTACAGCCGTATTGGGAGGTACTGGGGATTCTGCGTCAGTTTAGGGGTTGGTGGGATGGAAGGGCACACTTCAACCCATATTGTTTGTTTTATTTCATTCCTTCTAAACTCCTTGATTTTAG
Seq C2 exon
GCTGTGCTGTTAATTGGTGAGCAAGGGACAGCCAAAACAGTCATCATCAAAGGATTTATGTCAAAATTTGACCCTGAAAGTCACATGGTGAAGAATCTGAACTTTTCTTCGGCGACCACCCCAGTGATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262:ENSMUST00000067048:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(11.4=64.6)
A:
NA
C2:
PF127752=AAA_7=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTGGAGGCATTGGAGC
R:
CTGAAACATCACTGGGGTGGT
Band lengths:
278-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types