GgaINT0093186 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76657793-76658781:+
Coord C1 exon
chr2:76657793-76657935
Coord A exon
chr2:76657936-76658646
Coord C2 exon
chr2:76658647-76658781
Length
711 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TCTGTGTTGTCTTTGTCTAGGCT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTAATTGGATGCACTGGAATACACGTGTTGAAGAGTATGTATATCCTAGTAGTAGCACGCCAGAGTATAGCTCCATTCTTGTGCCAAATGTTGACAACGTGAGAATGAATTTCCTTATTGAAACCATTGCTAAACAGGGCAAG
Seq A exon
GTACTTAATCTTCATTTCACATCTAAATACTGCTAGTAGTGTGCATGATGAAGTTTTTGAGTCCGGAGTGAAGTAAGAAATTATTGAAATGGAAATATGAAAAGGAAGAACATCATTTTTGTGATATAAAACCATAATAGTGATTCCGGAGCTGTATTCATGTGAATATACTTGAATTCTATTATTCTCACTGCTTTCAGCCTTTTGTGGTTTCCCACTACCTGTCCTTCCCACCACCCATCCCTCCTACTGCAGAAATAATGGGAATGCAATGTAGCCATGGTGGAGCAGAAGTGGTTCAGGAGAGAGCACAGAATAGCAGACCACCTACCGCTGGTAGAAACTCTGTCAAGATGGGTCAGTGACAGAATTCAGAGACTTTTTTTTAAAGAATAATACTCCTTCATTACTAAAACGGTGTCAAATAAGGAGGATATGGTAAATAACAGCAGTGATTGAAGTGTTTCAGGTAATGAGGCTCTAGATAGTACATCCTTTTTTTTTTTTTTTTTAATCTCCTTTGTTCTTTATATTGTACTGAGTGACAAGACCATTTGCTGCAAAAGTTTAACAAGTGAGGCCTGCAAAGGCCTATGAGATGTTAACTATTTTGCTTCCACATGTTCCTTGTTGAGAAAATATGTGGCAGTAGTGAGGTTTTGACAAAATACACAGCTCTTGTGTGTTATTTTCTGTGTTGTCTTTGTCTAG
Seq C2 exon
GCTGTTCTACTAATTGGTGAGCAAGGAACTGCAAAGACTGTTATTATCAAATGTTTTATGTCGAAATATAACCCTGAAAGCCACATGGCTAAGAGTTTGAATTTTTCTTCTGCAACTACCCCATTAATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(10.4=58.3)
A:
NA
C2:
PF127752=AAA_7=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTGGATGCACTGGAATACACG
R:
CTGGAAAATTAATGGGGTAGTTGCA
Band lengths:
278-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]