BtaINT0050587 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59423090-59431989:+
Coord C1 exon
chr20:59423090-59423224
Coord A exon
chr20:59423225-59431866
Coord C2 exon
chr20:59431867-59431989
Length
8642 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTGACCTTTTCATTTAACAGAGG
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCTGTGCTGTTAATTGGTGAACAAGGAACAGCCAAGACAGTCATAATCAAAGGATTTATGTCGAAATATGATCCTGAAAGCCACGTGATCAAGAGTCTGAACTTTTCTTCTGCAACCACCCCACTGATGTTTCAG
Seq A exon
GTACTGGCTCTTGGGTGCAGCTGACTGAGCCCAGGTTTATGATGAGCTTTGGAGGCTTAAATCTCACGACTGTTCTGATGTACCCACTGAACTTCACCTGCAGTTTCACAGCCATTGTAAATCCTCTACTTATGTTTTCCAGTATCTTTATTATTCAGATTGAAGAGTTCCTGTGACCCCTTAGTTTTGAAAATTCACTAGAATGACTCACAGAATTCAGGAAAATGTTATGTTTATGATTGTGGTTTTATTATAAAAGATATGAATTGGGATCTGACAAAAGGAGAGATGCATAGGAAAAGGTTTGGGAGGGTCTCGAATGTGAACCCTCTTTGTCACAGGATGTATTTACTCTCCAGGCACATCTGTGTACCTCACCAACCAGGATGCTCACCTGAGCCTCGGTGAACAGAGCAGAAGTTTTATTAAAGTTTTATTACAGAAGTATGATCAGTTGGCTATGTGATTGAAGTCAATCTCCAAGCCCCTTCCCCCTGGGAGATGAGCTGATATGACATGGTTTAAAGCCCTAACACTCTAATCATATGGTTAGTCTTTCTGGCATAAGTGGTCTGAAAGACCCACCATTAGTAACAAAGACATCCTTTTTATTCAGGAAATTCCAAGAATTTAGACTCCTACCTAGGGACCAGGACAAAGGCTAGCCACATTCCTTAGTATATGGCAGGGAGTCGGCACATATTTTTACCAGTACCTCTTGGTGGTATTGGGGCTTCCCAGGTGGCGCTAGTGTTAAAGGATCCACCTACCAATGTGGGAGACTCAAGAGACACAGGTTCAGTTCCTGGGTCGGAAAGATCCCGTGGTCGGAAATGGCAACCTACTTCAGTATTCTTGCCTGGGAAATCGCATGGACAGAGGAGTCTGGTGGGCTACAAAGTCTGTGGGGTCACACTGAGTCAGACATGACTGAGCTGGTATCTTTCTTGGTAATATTTACCCCTCTCAGGTGGTAAAGACCTGTGTTTTATATGTCTATAACATGAAATACTTATTCATTTCCTGGAAAAGGGCACACATAATCTAGAAAACATCCTGTTTATTAATATAAAATTCATAAACCATGTAATAATTTCTAGAAGCATTACCATACTGAGGTATAATAATCAGAAGAGTAATAAAGCAGATTTTCAAAGTATTAGCATCTCTTCTCTAGGAGTTCAATTGTTGGATTTACAGCTAATAACCTTTAACCCAGATCCTTCCTATCCTTCAGTAAGAAGGGGGTCTCAGCACTTCACTGTTTATTTTTCTGTTCAGAGGCATCTTGGGGTCATCTGCTCTGTTTAGGGCCTGTTTTGACTGCTGAGCATCAGGGCTTCCTAGTAAGCTAGACTCATTAGTTTTAGAAAGCTTTCAATTAGCCCAACTGCTGTAATTAACTTGCTCATGATAATTTTCAGCCATTCATGCTAAACAAGGGGTGATGGAGCTGAGAGCATTTGTCTCCCATTTACTTGGCTCCAAACCAAATTGAAATTGTAGATGAGAAGATAGATATTGTTCATCCCTCTCGTGTTACCACAATGGCACATGTATCAGGGACCCATGTCTGTTGCTGGACAGATTGTTTTCTTCTGAGCTTCCTTTGTTTTCACCATAGGGTCACTTTCACATGTTTTATCCGTAGGAGGACAGGCTCTATGTCCTTTTCTGCTAGGGACTGTCCAGTTAACTTCTGTTGTCTCAGATAAATAATGAATAGCATCCGCCTCACTAACCAATGTATGAAATCTGAGCAAAAATTACATGGTCACCCTATTTTTAGCTAAGGAATTCAGTTAGTCTTTGAAGAGAGATGATTCTTTTTCTTTCTCAAACAAATATTAATATTTTTGCAAGCAATTCACACATATCTTTAAAAATGTGAGTAATACAGAAAGTAAGAAGAAAGTGAAAATTTCTTGAGGGAATTTCTGAAAAGATTTGTTTCTTTAAAAAATAATCTTAAAGTGTTTTGAATGCAACAGCCATCTTATAAATGCTGACATAGCAATAAGTTTTGGTTTTTAAAAATGAGAATTCTAGGGCTTCCCTGGTGGTTCAGTGGTTAGGAGAGTGCCTTGCTATGCAGGGGAAAGTGAAAGTTGCTCAGTCGTACTGACTCTTTGCGACCCTATGGACTATACAATCCATGGGAGTTTCCTGGTCAGAATACTGGAGTGGGTTGCCGTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCTGCATTGGAGGTGGATTCTTTACCAGCTGAGCCACCATTCACTGGACACCAGTTCAATCCCTGGTCTGGGAAGACCCCACATGTTGCTTAGAATGGCTTTCCTCAACTCCATGCCTGTCTATCTGGATGACTGACCATCTGGTTTTTATGGCTAAAATGGCACTGTCCAACTGGGGTTCACCCAAACATCCCATGTGTGTGTGAGCTGGACAGACTACAAGGTCAGAATCTTTGTTTTGGTGCCACTGATGGCTTAAGGTGATGTCATCATGACTATCATTCTGCTATTTCAGAGTCAAGTTGTCGTCTATTCTTAGAGAACAGCATACATCCCATAGTCCAGGCCCTTCCTAGAGATTTTAACTTTTTACCAATAAGCCAGGTTGAAAGAAGTGATTTTTATGGGCGATCATCCATCTAAGTCAATATTTTACAAATGGTGTTTGATTAATACTAATCTTGGGGTTTCCCTAGTCACTCAGTGGTAAAGAATTCACCTGCTAATGCAGGAGATTCAGGTTTGATCCCTGGGTCAGGAAGCTACCCCAGAGAGGGAAACTGCAACCCAATCCAGTATGCTTGCCTGGGAAGTACCATGGACAGAGGAACCTGGCAGGCTACAATCCATGGGGTTGCAAAAAATCGGACACAGCTTAGAGACTAGACAACAACAATACTAATTCTGAGAGTTTTATTTATTTATTTTTTGGCTCATAAATGGATACTTTAGGGATGTAAATAAGAATCTCTTAATGAGCACTGTAAATCAGTCTGAGAGGAGCATTATTTTATGGTATGTGGTTTTTTTGTTGTTGTTGTTGTTAACTGAATATGAATGAATGAAGACCATGATGGGCAGGAACAAAGACTGAAAAGGCATATTTAGAAACGAGTCTGGAGAAGTGAGCAGGGAGCATCATGGTGTTCCTTGTAAGCCACTAATAAGGAATCATGGGGATACTGAGCAGGATTGCATCACCACTTAGAAAGTTCATTCTGGCTGCTAATGGGAAAGATAGGGCTGTATTCAGAGAGACTCAAGAGGAGATGGTTATAGGATGCATTCAAATTGGGGCTGAGAAGCAGAACGGACAGGACTTGTTTTTGATTGAGTGGATATTGTTGGAAGAGAGGGATAGGAGAGAGAGGAAAAAATTAAAGATGACTCCCGAGTTTCTTATCTTTATTGATCTATGTGTCAAATATTTACTGATAAATATATCATACCAGACACCTTTATAGACACCCAGGAGGCAGTGATGAATAAGATAAACAAGGTGCCTGCACTCCTTTTATTCTAGTGGATGAGACAGACAATATTCCAGTAAATGAATATACCCATTTGATTTTATTAACTGGACTGGGCTTTTATATCACCAGAAGGATGGATGAAGTGGGACAGTAGGTCAAGGAGACCAGGGATTAGGTGGATGGCACAATATTGCAAATATGTTCAGTAACTGATTTCTTTGGGAAACAGCAGAGTCTAGACAAAATTGTAAATCATTCACTAGAGACATTGTCTATAACTTATAAAAAAGTTTCCAGGCCTGACTGGGGGCAGGGTGGGTAATTTACAAGGCTGTGACATTCACTCATTCATATGAGAAAAACAAACAACTGATTTAGAGCATATCATTGTCCAGAGAGGAGGAGATACAGTAAAAAGCAATATTTAAATTATAATAGAACTTAACCACTTTGGAGGGGCTTCCTAGGTGGTGCTAGTGGTAAAGAACCCACCTGCCAATGCAGGAGATGTAAGACGCTTGGGTTCGATCCCAGGGTCGAGAAGATCCCCTGGAGGAAGGCATGGTAACCCACCCACTGTAGTCCATCAGGCTCCTTTGTCCAAGGAGAATTTCATGGACAGAGGAGCCTGGTGGGTTACAGTCCAGGGCTCACAGAGTTGGACATGACTGAGTGACTAACACACATACATCCCTTCTTTATTGGATTTCCTTCCCATTTAGGTCACCACAGAGCACTGAGTAGAGTTCTCTGTGCTATACAGTAGGTTCTCATTAGCTATCCATTTTATACACAGTTGTGTATATATGTCAGTCCCAATCTCCCAACTCATCCCATCTCCCCTTTCCGCATTGGTATCTGTACATTTGTTCTCTACAGAGATGCTTCTGTTTATTCCTACAGATTTAGTTTTGTCTTTTGGTGCCGACGTGGATGATACTATCCCAACCTCCATTATACAAAGGGTCCAGCCCTGCTCAGAATCTCCTTATAATCACAGCCAAAGCTAAACAAGGGGACTTCTCTGGTGGTCAGTCCAGCGATGAGGAATCCCCCTTCCAATGCAGGGGACACGGGTGTAATCCCTGGTCAGGGAACTAAGATCCCATATTCTCTGGGGCAACTAAGCCCATGTGCTCTAACTACTGACCCTGCGCTCTAGAGTCCACACTCCACAACTAGAAAAAGCCTGCCATTCACAATGAAGAGCCCGCTCACCATGAAGACCCAGTGCAACCAAAAAAAAAAAAAAAAAAGCTAAACAGGGCTACTGTCCAAGAGGCTTCTCAGATCTGTGCTCTGAGCTCCACAGGCTTCCACGATCTGAAGACCGTTGTCTCCTCATTCAGAAGTCTGCCCACTGGTGTCTGTGCGTGCTCAGTCGCTTCAGTCGTGTCTGACTCTTTGCCACCCCATGGGCTGTAGCCCTCCAGGCTCCTCTGCCCATGGGATTCCCCAGGCAGGAATACTGGAGTGGAGAATACTGCAATTTCCTCCTCCAAACTGGTATCTGTAGCCTGACATGATCTGTTTTGGGGCAGATGCAGTCACACTAAATCACTCCTCTCCCCTCAGAAAGTGGAGGACAACACCCTCTTTTTGCTACATTCTAAGCTCAGATGGTACAGGAGGGAACTGCACTCTGCTCTATAAAAAAGTGTCCTAGCAATGTGGAAAGGAACATTAAAACTGATGGAAGGGGTGTTGGAAGGGGGTAATGGGGACACTGGGGAAGAATCCCAGACTACTGACTATAGCATTACCATTTGCATGGAATGTAGTTTGGAAATCAATCAGTTATTCAAATGTATGTGCTCAGTAAGCTGAATCAGCACCGCAGAGAAAACAGAAAGGGCTTCATGGTTCTCGTGCTCTAGAATCTCAGTCTTAAAGATCTCATTTCTTTCCCACTGATTCATGATTTAAGTCATGTTAAAGATAAAACACAGGGACTTCCCTGCTCATCCAGTGGTTAAGACTTTGCCTTCCAATGCAGGGAATGTGGGTTTGATCCCTGGCTGGGGAGCTTAAGATCCCAGATGCCTTGGGGCCAAAAAACAAAGACATAAAACAGAAGCAATATTGCATCAAATTCAATAAGGACTTTAAAAATGGTCCATATAAAAAAAACTTAATAAATAAATAAAGATAACGTATAAGAGAAACTGGAGGTATATTGAGGTAAAATGCATTCTCCACTTATCCAAAAAATAGTTTCCTTATTGTATGATGAAGAACAAATCAGTTAAAATGACTGTAACAATCTTTCAAGATATTAAGTTGGTGCAAAAGTAATTGCAGTTTTTGCATTGTTGAAATTTGCCATTTACTATTGGGATGCATCCTGAAATAAATGTGGTTATGTTATACATCATTTTAATGCACACTTCTCACTTTATGTTTTTTTGCTAATGACTTGTTGCTGTTTATTTTATATTTATTGTAGACTAGGGAAATGATGTTAAACTAAAAGCAAATTCAAGCGACTTTCTTATTCAAGTTCAAAATGGGTTGTACAGCAGTGGAGACAACTGGCAACATCAACAGTGCATTCGGCCAAGGAACTGCTAACAGACAGACAGTGTGGTGGTGGTTCAAGAAGTTTTGCAAAGGAGATGAGAGCCTTGAAGATGAGGAGCATAGCGGCCATCCATCGGAAGGAGACAACCACCAATTAAGAGAAATCATCAGAGCTGATCCTCTTATAACTACATGAGAAGTTGCTGAAGAACTCAGCGCTGACCATCCTGCAGTCATTTGGCATTTGAAGCAAATTGGAAAGGTGAAAAAGCTTGATAAGTGAGTGTTTCATGACCTGACCGCAAATAAAAAAAAATCATTCTGAAGTGTCGTCTTCTCTTATTCTACTCATCAACAGTGAACCATTTTTCAATCAGATTGTGATGTGTGATGAAAAGTGGATTTTATTCGACAACTGACAATGACCAGCTCAGTGGTTGGACTGAGAAGAAGCTCCAGAGCACTTCCCAAAGCCAAACTTGCACCGAAAAATGGTCATGGTCACTGTTAGGTGGTCTGCTGCCAGTCTGGTCCCCTACAGCTTTCTGAATCCCAGAGAAACCATTACATTTGAGAAGTATGCTCAGCAAATCGATGAGATGCAGTGAGAATGGCAAGTCCTGCAGCCAGCACTGGTCAGCAGAATGGGCCCAATTCTTCTCCACAACAACGCCAACCACACGTCACACAACCAATGCCTCAAAAGTTGAACACATTGGGCTGCAAAATTTTGCCCCATCCCGCGTATTCACCTAATCTCTCACCAACTGACCACCTAAAAAAAAAAATAGTATCTTGAAGTATCTTGACAAACATCTTGACAACTTTTTGCAGGGGAAATGCTTCCACAACCAGCAGGAGGCAGAAAATGCTTTCCAAGAGCTTGTCTAATCCCAAAGTACAGACTTTTACCCTACATGAATAAACCAACTTATTTCTCATTGGCAAAAGTGTGTTGATTGTAATGGTTCCTATTTTGATTAATTCAGATGTGTTTGAGCCTAATTATAATGAGTTAAAGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTTGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACATGACTGAGCAACTTCACCTCACTTCTCTATAATGAGTTAAAATTCACCATCTGAAACCGCAATTAGATTTGCACCAACCTAATACATCCATGAAATTAGGCCAAGAGAGAAAGGAAAACTTATACAACTGTCCTTGTAAAACTCTCCAGTTTAGCCATTTCAAGTTGTAAGTTTCCATCATCATTTTAATACATAATACCAAGGATATGAAAAAATTTCACCATTTTTAAATGGAAAGGTACATAAATATATCACACTCCATCCAATTACAACACAAATTTCCCATGACAATACAATGGCAAGAAGAATTTCATATCCCCTAACATAAAACCATTTAAAGTAATGTACTAGGCTACATTTAGCTCTCCTTTTCAATGAATTTAAGTGGATAAAGCAATTAATAATCTCTTGACAACTCCCTATGGCAGGTAAGATTCTTCCAGATAGTCTCTTGTCCATTGATAAGAACTCATAGGGACATGAAGATTTTATGTCTTGGGGGGGTCTTCTAAGAGCTAAAAACCAAGGATGGAACAAGTGAGGCAACATGGAGTAATAGCCACATACCTACACTTTCTTCCTCTTCATTATGACCCTAGTGTCTTTGAAATAGCAGGACATTACTAGTAAGCTATAAGAAAGCTAAATTGTCAAAAGCAAAAACAAAGGAGGGAGAAAAATTCAATAGTTTGTGAACCTAGAAGCTGAGATTTCTTCCTGAATTTGGAATTGCTGCCTGTTGAATAGTCACTGAAAACCGTATCTTTGGATTGGTGTCTCCAACTGCATCTCCCCACTTAGATGACCTAGAACATAACAACATCAGCATATCCAAACATAGACATCTCTTCCTCATCACACAGTCTGCACCCACTCCTAGGTGCTCATCGCTGGGATTAACACCAGCTGCCTAGCTGCCTCATCCAAATATTTGAATGCTTGCAGGCATTTCTGAGTTGCTAGTCATGTCTGACTCTGTGTGACCCTATGGACTGTAGCCTACCAGCCTCCTCTGTCCATGGGGACTCTCCAGGCAAGAATACTTGAGTGAGTTGCCATGTCCTCCTCCAAGGGATCTTCCCAACCCAGGGATCAAACCCGGGTCTCCTGCATTGCATGCAGATTCTTTACCTTCTGAGTCACAAGGGAAGCCTGGATATATGTATCTGTGTAGCTAATTCACTTTTCTGTGCAGTAGAAACCAATGCAACATTGTAAAGCAAATATACTGCAATAAAAATGAAAAAAAAATAGAAGTCTCATCTAAAAATTTACATTGATTACCACTTTATTTACCTCTAAATAAAATCGATTTTCAAAGGTTATAAATGAATGTTATGCAAGAAAATTTAGGTACCTCATTCTCTGTTTTCCAGAATTAGGGACATTTTGGGGTTTTTATGAGTAATTTCTATCATTTCAAACATTTCTGGAATTTTAAAATAATCGACCGTGTCTTAGGGGATATTTTCACAGATGTTTCTGTTGACCTTTTCATTTAACAG
Seq C2 exon
AGGACAATAGAGAGCTATGTGGATAAACGCATGGGCACCACATATGGCCCTCCAGCAGGAAAGAAGATGACTATCTTCATTGATGATGTGAATATGCCAGTAATCAATGAGTGGGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]