GgaINT0093187 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78564593-78566630:+
Coord C1 exon
chr2:78564593-78564727
Coord A exon
chr2:78564728-78566507
Coord C2 exon
chr2:78566508-78566630
Length
1780 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
GGATAATTGTTTTTTCACAGCGC
3' ss Score
6.37
Exon sequences
Seq C1 exon
GCTGTTCTACTAATTGGTGAGCAAGGAACTGCAAAGACTGTTATTATCAAATGTTTTATGTCGAAATATAACCCTGAAAGCCACATGGCTAAGAGTTTGAATTTTTCTTCTGCAACTACCCCATTAATTTTCCAG
Seq A exon
GTATAGTAGTCATTCACTTTCCAATAATACGTTACTGGATTCAGTGATTAGTGGATGTATTGAGAAGTTGTTGGCAAGATACTTCTGAAAGTGATCTATTTAATTGCAAATGAGCACAGAAACAAAAAAAATACCTACTCAAATGGACAAAGCACTTGATTTAAAAGACTTCTGTAAACCGTGTCTCACTAGTTATTGAGCTATTCTTAGACTATTACATGCTTATTATTTGCTTCACCATACTTAATGATTTTACGTCAGATGTATCGGTTCTCACTAATTGGGTAGAACTGTCAGCAACTTTCCTTAGATTTCACTAAAACCCATGTGTAAAGTAAGTGCTACCCGCAACAATCTGTCATAAAGTCTGTGCTGTCTGCAATTTGAAGTAAATTACGTTACTCATTAAAAAGTAACACATGCAGCACAGCTGCTCTAAACAGAACAATGAATACTTAAATCCTGAATTGTACTGCCTGTCCAAATTTCTGCTGAGCTACTTAGATTTATTTCAAGATTCTTTAACCTACTATCAGCATATATCTAGTAAATATTTTTTAATATGATTCAGTTTGCCTAGCCTAAGCGCTGTCTGTGCTGTAAACAGAAGTGCTGTCCCTGGGCCTGAGGTGTCATCTGTAAACTGGCTACATAGAGAGAAGCTGAAAAAAATAGTTGTGGCAAGCATGCTTCTTAAAAAAAATAAAGTTATTTCATTAAGTCACTTCAGTTTACTTGTATGAATATAATTATCACCTTATAATTTTATGTGGTATATTGATGTCTACTGGAAAGGTCATCAAGAATCACTTCTGTCAGATCTGACAGATTATTAGTTTAATCTTGCAATATTAACAGATATTTAATTTGTCATACTCAGTGTTACAGATGCTAGCTAGCACTAGCTAGCAGGTGGTTGAACTGACAGAGGATAGACAAAATGAATATGTATCACAATAAAAGATTCTTAAAATTCATTAGAAGTTTTATATTTTGCATTATTCAATCGAATAAGTCAAAAAGTAGTGCTAACAGCTCTGGTGGAGCTCGTACTGCCCAACTAGTAATTAACAAAACAGAATTTCAGAATTGGAAGCTTTGGCATGACATCTCAAACAGATGTGCATGACTGCCCATCTACTGCCATTCTACTCCTCTCCCCTTGTCCTCCTTTGCTTTCCCCTCCATCTCAAGGTGAATACTTCTCTCTTAAACCTCAAATGTGGAGGCAATGATTATTTAAGGTCCTTCTCAACTACATGGACTACAAAATAGTTCAGTAGAATACAAATGTAGATGAAGATAATGCATATACTTTATGATTCTCATTAGCATCACAGAAATTGAACATCTCTCAGTGCATTTCAGTGTTTGTGTATACAAAATTAAGCTTCATGAATTCATTTCTTTGCATTAGTCTCAAACAGGCATGTTAATTATGTGTTAAAATACCATCCTAAAACCAAGAGGGTCAGCAAACTGACAAGTCTGAAACTGGAAAGTAATTTGAGATGGTTTCAAAATTATGAAACTGAGGCACGGTTATATGAACTTCATATTTGGAATATTTTATACTGACCTAATTGTATAGCATGACATTTCAGATGTTCCAGTTGGATTACTGCAATTACCTCTAGCACATGTGTTGTCTAAATTTTCCTTTGTAAAACTCTGTGTAACAAAAAACTTCCCATATAATTACCTGTAATATGGTTAAATGGGTGACTCAAATGAAAAAGTATGGCTCTTTGTAATTTTTCGGATAATTGTTTTTTCACAG
Seq C2 exon
CGCACAATAGAAAGTTATGTGGACAAGCGCATGGGCACAACATATGGTCCACCTGCAGGCAAAAAGATGACAGTCTTCATTGATGATGTGAATATGCCCATAATAAATGAATGGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.3=100)
A:
NA
C2:
PF127752=AAA_7=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCTACTAATTGGTGAGCA
R:
TCTCCCCATTCATTTATTATGGGCA
Band lengths:
254-2034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]