BtaINT0050606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59491841-59494096:+
Coord C1 exon
chr20:59491841-59491996
Coord A exon
chr20:59491997-59493913
Coord C2 exon
chr20:59493914-59494096
Length
1917 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ACTTTCTTTTTATAACAAAGGTG
3' ss Score
5.6
Exon sequences
Seq C1 exon
ATCACATCTCTAAATCACAAGTACTTCAGAAACCACCTGGAGGACAGTCTTTCTCTCGGAAGACCCTTGCTTATCGAAGATGTTGGGGAGGAACTAGATCCAGCCCTGGATAATGTTTTGGAGAGAAACTTCATTAAGACTGGATCTACCTTTAAG
Seq A exon
GTAGGTTAAACCTGCCAATGACAGTGTGCAGAGCAATTTCCACGAGGCCAGGTCAGTGTGACAGAGGTCACAGTTTCTCATTAAACATCGACTCAGATTCAAGTCTGGGGCAGGAGGCATTTGCTTTTCTCTTCCACCTTCCTGAGTTAGGATCAAGAGTAGCCTTTTTAGGAACATCTACTTCACTTGTATCATGAAGCCTGACTCCATTCTGATGTTAGACTTTGCATGGCTTTCAAGCCCCATCATGCCCTCTCCCGTGTCATCCCAAATCTGGGCAAGCTGATGAGAAAACGTGGCTCTGCTCTCTTTTGGTGAAAGTGAAAGTCACTGTTTTCAGTGACTATGAAGTGCATGGAATCTATACAGTCCATGGAATCCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCTCTTCTCCAGGGGATCTTCCCAACCAGGGATTGAACTCAGATCTCCCACAGTGTAGGTGAAATCTTCACCAGCTGAGCCACAGTGGGAAATCCAAACCGTGCAACTCCCTGTTCATGACCATATCTGGGAATCCTCATCCTAGTCGCATCCCATGATCTCCGTAAAACCCTAAAACACCTGCCCCTCTCTTCTCTCTCAACTGATTTTTCTTTGGACCTGTTTGGCAGCCTACCCTGAATCTCCAGAAATTCTCATGTGAATAATAAACCTTTTCATATCTTTTTGGTACATGACTGATGTCATCAGTCTTGAATCCATCTCACTTCTGCAGTATGATCACAACCGTTTGGTGATAAATTCTATGTGCATGCGTGCTCAGTCGCTTCAGTCTTGTCTGACTCTTTGCAACCCCATGGACTGTAGCTGGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACAGGAATGGGTTGCCATGCCCTCCTCCAGGGGATATTTCCAACCCATGGATCAAACCATGTCACTTGTGGCTCCTGCATGGCAGACAGATTCTTTACTGCTGAGCCACCACGGAAGCCCATGGAATAAATTCAATATTTATTTATTTATAGTTGTATTAATTTGTTTAGTTTTGGCTGTCCTGGATCTTCGTTGCTGCCTGGGCTTTTCTCTCAGTGCGGTGAGTGGGGGCTACTCTCTAGCTGCAGTGCATGGACTTCTCGTTGTGGTGGCTTCTCTTGTTGCAGAGCATGGGCTCTAGGGTGCTCAGGCTTCAGCAGTTGTGACACTGGGCTTTGTAGTTGCAGTTCTCGGGCTCTAGAGCACAAGCTTTATAGTTGTGGCGCATGGACTTAGTTACTCCTTGGCATGTGGGGTCTTCTTGGATCAGGGATCCAACCTGTGTCTCCAGCATTGGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTTGTGTCCGACTCTGTGTGACCCTATAGACGGCAGCTCACCAGGCTCCCCCGTCCCTGGGATTCTCCATTGGCCGGTGGATTCTTTACCACTGAGCCATCAGGGGAGCCCCAATTTCTATTTTTATTGGATGATGTATGTTGGATGGCATCACTAACTCAATGGACATTAGTTTGAGCAGGACCCAGGATATGGTGAAGGACAGGGAAGCCTGGCGTGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACGTGACTGAGCAACTGAACAACAACCAAAAAATGTTGGATAACTTCCTTTCCTCCCTCCTTCCCTTCTTCCCTTACCCCTTCCCTCTCTTTCTCCCTTCCTCTTTCCTCTCTTACTTTTGTCCTTCTTTCTTTTCATCCTAGTGGCCTGAAGCCCTCTGAATGCCTAATGAACATTTCTTTTTAAGTATACACATGATCTCCAGGTGTATAGTGGTTTAAAGCAATACTAGATTCTAAGCAAAAGAACACACAGTAAGGTATATCTGGGTTTTATTACTTTTAACTTTCTTTTTATAACAAAG
Seq C2 exon
GTGAAAGTCGGTGACAAAGAAATAGATGTGATGGATGGCTTCAGACTCTACATCACCACCAAGCTGCCCAATCCAGCCTATACCCCTGAAATAAGTGCTCGGACCTCCATCATTGACTTCACAGTCACTATGAAAGGTCTCGAGGACCAGTTACTGGGGAGAGTCATTCTCACAGAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCTCTAAATCACAAGTACTTCA
R:
TGCTTCTCTGTGAGAATGACTCT
Band lengths:
336-2253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]