GgaINT0097267 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:91119938-91120542:-
Coord C1 exon
chr2:91120387-91120542
Coord A exon
chr2:91120121-91120386
Coord C2 exon
chr2:91119938-91120120
Length
266 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTGTTTATTATTGTTTTCAGGTG
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTTACAGCTATGAACCACAAGTTCTTCAGAAGTCATATAGAAGACAGCCTGTCTCTTGGCCGACCCCTGTTAATAGAAAACATTGGAGAGGAACTTGATCCTGCTCTAGATAACATCCTGGAAAAAAATTTCATAAAATCTGGTTCAGCACACAAA
Seq A exon
GTAAGATGAATTGTGAACGTGAAAGTAAAAAAAAACGCATAGGGCAGGTGCTGCGCATCTGATAGTCTGGATGATATGAAGATTCATACCTTCGCTATGCTAAAATAAGATAAGCAATGAACTCATGAGTTTTCTTATTTGTGTAAAAAGTGTATTATGAAATAATAATAAAAAATATTTAATCTGTTTTTCATTGATGAAATGACTGTTTTTTTCTGATTTCAACTTTTGAAAACTAGATTGTTTTTGTTTATTATTGTTTTCAG
Seq C2 exon
GTGAAAGTAGGTGACAAGGAGGTAGATGTCATGAAAGGGTTTACCCTTTATATGACAACAAAATTGGCTAATCCTGCCTATACTCCAGAAATCAGTGCAAGAACAACAGTGATTGACTTTACTGTTACCGTGCGAGGGTTGGAAGATCAGCTCCTTGGCCGTGTCATCCTCACAGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013268:ENSGALT00000021845:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCTGTCTCTTGGCC
R:
TTTCTGTGAGGATGACACGGC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]