HsaINT1011512 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13751078-13752289:-
Coord C1 exon
chr5:13752134-13752289
Coord A exon
chr5:13751261-13752133
Coord C2 exon
chr5:13751078-13751260
Length
873 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATTTCTTTTTATAAAAAAGGTG
3' ss Score
3.9
Exon sequences
Seq C1 exon
ATCACGTCTTTAAATCACAAGTACTTCAGAAACCACCTGGAAGACAGCCTTTCTCTTGGAAGGCCTTTGCTTATTGAAGATGTTGGAGAGGAACTAGATCCAGCACTAGATAATGTTTTGGAAAGAAACTTCATTAAAACTGGGTCTACCTTTAAG
Seq A exon
GTAGGTTAAACCTATGGATGACAATGTGCAGAACAATTACCATGAGGCCAGGTCAATGTGACACAGATAGAATTCTCTCAATAGGCAACAACTTAAATTTGAGTCCTTGGGAAAGGTTTGTTTTTCTCTTCTACACTTCTTGACTTTGGATTAAAATATCCAGGAGCAAGCCTTTTAGGAGTATTGACTTCACTTTTGTAATGTGAAAAGGGTCTGACTGCATTTGATGCTGACAGCTTTGAAGCCTCTCCATGCCCCTCTCCCCTTCTGCCCCACCCACATCTGGGCAAGCTGATAAAACCTGGGTGCCCCCTGCTTTGGCACAGGTTGAAATTCAAACCATGCAATCCCCTGTCCACACCTATGTATGGGAACCCTCACCCCAGCTCTACCCCCTAAACACCACAAAGCCCTAGAGCAGCTGCCCCTCCCTGCTCTCTCAAGCCGGTTTTTGGGACCTGTTTGGGAACCTGCTCTGATCTCTCCCAAAATCTTATCAAGTGAGTAATAAACCTTTTTATACTCTTTCGGTGCATGTGTAGCATCATCAGTCTCAACCTGTGAACTGAATTTTGGGTAAGGGATCCATCTCACTCCTGCAATGTGATCATAACAATTTTGGTGTTAAATTCTATATTCAGTCCATTATATATATGTGTGTATATATATGTTTCTTCCTCCCATCCTTCTTTGCTTCCTTTCTTTCATCCTAGTTGTCTGAAGCTGTGCAGACGCCTCATGACCATTTCTTTTTTAGTATACAAATGATCTCCAATTATGTAATTATTTAAAACAATACTTGATCTGATACAAAAAAGACACAGTAAGGTATATCTCTATTTTATTACTTTTAAATTTCTTTTTATAAAAAAG
Seq C2 exon
GTGAAAGTTGGTGACAAGGAAGTAGATGTGTTGGATGGCTTTAGACTCTACATTACCACCAAATTGCCTAACCCAGCCTACACCCCTGAGATAAGTGCCCGTACCTCCATCATTGACTTCACTGTCACCATGAAAGGTCTAGAAGATCAGTTACTGGGGAGGGTCATTCTCACAGAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGTCTTTAAATCACAAGTACTT
R:
TCTCTGTGAGAATGACCCTCCC
Band lengths:
334-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains