GgaINT0093204 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78589583-78590383:+
Coord C1 exon
chr2:78589583-78589738
Coord A exon
chr2:78589739-78590200
Coord C2 exon
chr2:78590201-78590383
Length
462 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTTCATACTTTTCTTAAGGTG
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATCACTTCTTTGAACCACAAGTATTTTAGAAATCACTTAGAAGACAGCCTTTCTCTCGGAAGACCTCTTTTGATAGAAGATGTTGGTGAAGAGCTGGACCCAGCATTAGATAATATTTTGGAAAGAAATTTTATTAAATCCGGTTCCACCAATAAG
Seq A exon
GTAAAAACAAAGCAAATGATCAAACAACTGGAAACAGTGTCCTCCCTGTCCTCCACAAAATAACATCTGTTAAATATATGCCTCTAAAATGTTAAAAGTCATTTACACTTGATTAACAGTGACGCAAAGTAGAGTTTAAGTTCACATATAATTAAGACATTTAACCTGTACTGTTTCTTTGTTTATGATAACTTTTAAGTGAAGAAAGTACCAAGGTTCCCATTTGCTTGTGCCCTTGTGCTCTTAATTTGGGATGTTAACCAGAATTGACAGAATATGTTAGCCTATCAGTTAAAGTGTTTTGTGGATATTCTCAACAAATTCATTGCATCAGACCTGTAATTTTAAGCTGTATGTTTGTGCTTTTGAACAGAAAAATACATTTGTTTCTACATGCGGTACCTGAAAGAATTTGCACTGGCCCTTGATGTTTCAAGTCTTCTTTTTCATACTTTTCTTAAG
Seq C2 exon
GTGAAAGTTGGTGACAAAGAAGTAGATGTGATGAATGGCTTCAGACTTTACATTACCACAAAACTGCCAAATCCAGGTTACTCTCCTGAAATCAGTGCTCGAACCTCTATCATTGACTTTACTGTGACCATGAAAGGTCTTGAAAATCAACTCTTGGGTAGAGTCATTCTAGCAGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTTCTTTGAACCACAAGTATT
R:
TCTCTGCTAGAATGACTCTACCCA
Band lengths:
334-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]