GgaINT0093204 @ galGal4
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76683436-76684236:+
Coord C1 exon
chr2:76683436-76683591
Coord A exon
chr2:76683592-76684053
Coord C2 exon
chr2:76684054-76684236
Length
462 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTTCATACTTTTCTTAAGGTG
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATCACTTCTTTGAACCACAAGTATTTTAGAAATCACTTAGAAGACAGCCTTTCTCTCGGAAGACCTCTTTTGATAGAAGATGTTGGTGAAGAGCTGGACCCAGCATTAGATAATATTTTGGAAAGAAATTTTATTAAATCCGGTTCCACCAATAAG
Seq A exon
GTAAAAACAAAGCAAATGATCAAACAACTGGAAACAGTGTCCTCCCTGTCCTCCACAAAATAACATCTGTTAAATATATGCCTCTAAAATGTTAAAAGTCATTTACACTTGATTAACAGTAACGCAAAGTAGAGTTTAAGTTCACATATAATTAAGACATTTAACCTGTACTGTTTCTTTGTTTATGATAACTTTTAAGTGAAGAAAGTACCAAGGTTCCCATTTGCTTGTGCCCTTGTGCTCTTAATTTGGGATGTTAACCAGAATTGACAGAATATGTTAGCCTATCAGTTAAAGTGTTTTGTGGATATTCTCAACAAATTCATTGCATCAGACCTGTAATTTTAAGCTGTATGTTTGTGCTTTTGAACAGAAAAATACATTTGTTTCTACATGCGGTGCCTGAAAGAATTTGCACTGGCCCTTGATGTTTCAAGTCTTCTTTTTCATACTTTTCTTAAG
Seq C2 exon
GTGAAAGTTGGTGACAAAGAAGTAGATGTGATGAATGGCTTCAGACTTTACATTACCACAAAACTGCCAAATCCAGGTTACTCTCCTGAAATCAGTGCTCGAACCTCTATCATTGACTTTACTGTGACCATGAAAGGTCTTGAAAATCAACTCTTGGGTAGAGTCATTCTAGCAGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021223:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTTCTTTGAACCACAAGTATT
R:
TCTCTGCTAGAATGACTCTACCCA
Band lengths:
334-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]