BtaINT0050611 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59515559-59519539:+
Coord C1 exon
chr20:59515559-59515680
Coord A exon
chr20:59515681-59519389
Coord C2 exon
chr20:59519390-59519539
Length
3709 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTATCCCCTGGTATTTTCAGATA
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTGGTGCCTCCTTGGACTTGAAAGCCTGTCCTCCTAAACCATCTAAATGGATCCTGGACATGACCTGGCTAAATTTGGTGGAACTCAGCAAACTTAGACAGTTTTCTGATGTCCTTGATCAG
Seq A exon
GTAACTTGTGCTTTGAATAAACTTATGATAATATCCCAGTGGGCAGCTTCCTGATTTATCCCTGGCTGTTTGGGGAAGAGAAAGATTTCTTGCTGCTGTCACTCCTAAAATGGAATGACCAGTGCTTGACCTTCCTCATGGCTCATTCATATTCTGATAAAGTACACTCCACCCATGGCAGGCTGGTCTCCAGGAAGTAATTAGTTGCCCAGGAAGTTTAACTGATGCTGTCCTGGGCCATATGTCAGTATCACCAATTGGAGGTCTACCAGTGGGAAAACAGATTCAATTAGTTTAAGAGATTGCTTTTACAATATAAAATCATGCTATTTTCGATATTTTTTTTGTTTTTCTACTCAAAATGAAACTCTAGTATTGCTTTTCTTAAAAAAAAAAAAGAGATTAGATATGGTCAAGAAGTTTTATCATCTTCCTATAGATTGAATGACGAGAAATAGGAACAACCTGCCCTTGAATGCTAAATATCCTTTCTTGCCTCTAGTTCCTGTCTCTCTCTTCTTCCTCTCCTTGTTTGTACTGCCTTAGCTAGGCATCTGGGTATGAATCTAACACAAACACCTGGCCGTTTATTTCTAGAAGTTGTTGTACTTTCATAAACAGCCAGTTTTGGATGAATTGTGTGTATATTGGAATTATGGCACTTGGGTACAGAAAGTTGAATTGGGACAAGTCAAGAAACAGGTTCTTGAAAATCTGATGACCAGCAGGAAGTTGCGTGAACAGCAAGGTTGCTTTCTTCAGCTGCACATTGAAGGCTTTGACCAGAAAATGTCCAAACACTGGTCCTTTTTCAAAACTGATGTATGATTGGGCTTTCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATCCCTGGGTCTGGAAGATCCCCTGGATACCCATTCCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGGAGCCTGATGGACTACAATCCACGGGGTCACAGAGTCGGACTTAATTGAGCAACTAACACTTTCACACATGGTTGATTCACAGTGTTATGTTATTTTCTGGTGTACAGAAAAGTGATTTAGCTTTATATATACACATGGACACACACATACCCACTATATTCTTTCTCATTAGGGCTTATTATAAGATATTGAATATAGTTCCCTGTACTGCAGGACCTTGTTGTTTATCTATTTTGTATATAGAAGCTTATATCTGCTAATCCCAAACCCCTGGTTTCTCTCTCTCCCACCCTCTTTCCTTTTTTGTAACCATACATTTGTTTTCTATGTCTGTGAGTTTGTTTCTGTTTCATAAGTAAATCTATTTGTATTGTATTTAGAAATGATGTGTATGTGTATGTTAGTCACTCAGTTGTGTCTGACTCTTTGGGACCCCATGGACTGTGGCCTGCCAGTCTCCTCTGTCCATCAGGTTCTCCAGGCCAGAATACTGGAGTGGGTAGCCATTCTCTTTTCTAGGGGATCTTCCTGACCCAGGGATTGAACCCAGGTCTTCTGCATTGTGGGCAGATTCTTTACCACCTGAGCCACCAGGGAAGCCTTTAGAAATGATGTCATATGGTATTTGTCCTAACGTTGGTCCTTGACTTTGCCAGCTTAGGTTGACGGAAAGCTTGAGCTGTATTTTTATGTTTTGGCTTAGGCCTGGTGATGACCATGTAATTTGGGTGCAAGCTATTCTCTTGGGTTAAACAGCTTTTCTTTGGGAGATTTTAATGAATTCTAGCTTCTTCCCCTATGGGGTAACTCCTGGTGACCTTTCTTGTACCATTATTTGTTATTGAAGCAACTGTCTTTTGGATCTTATATTTTATACCTGAAATCCCTCCACATAATGTAGTCTTTTGTGATTTGAAACAGGTTATTTTTTATTCTTACATGATACTTTCTGAATATGAACCCATATGCCTTTTTCCTTTGATTACACCTCTGAGAAATACACTTGGAGCTTTTTTTTTTTTTTTTGAAGTATGATTGCTTAACCATGGAGTTAGTTCCAATGAAGTGAACCAGCTAAATGTATACATATATCCCCTCCCTTGTAGACCTCCCTCCCACCCACCCCCTATCCACCCCCGTAGGTCATCACAGAGCACCGAGCTAAGCTCCCTGTGCTATACAACAGCTTCCCAATAACCATCTGTTCTACACATGTATGTATGTATGCTTAATCACTCAGTCATGTCCAACTGTTTGTGACCCCATGGACTGTAGCCCGCCAGGGTCCTTTGTCCATGGAATTCTCCGGGCAAGAATAGTGGAGTGGGTTGCCATTTCCTTCTCCAGTTTTACACATGATACTGTAAATATGTCAATCCAAAATCTCTCAGTTCGTCCCACCCTCCCTTTTCCCTTCTGTGTCAACATGTCTATTCTCTACATCTGTGTCTCTATTCCTGCCCTGCAAATGGGTTCATCTGTACCATTTTTTCTAGATTCCACTTACATGCATTCATATGCAGTATTTCTTTTTCTCTTTCTGACTTTCTTCTCTCTGTATGGCAGACTCTAGGTTCATGTGCATCACTGCAATGACCCAATTCAGTTCCTTTTTATGGCTGAGTAATATTCCACTGTGGGCTTCCCAGGTCGTGTGGTGGTAAAGAATCTGCCCCTCAGTGCAAGAGGTGCAGGAGATGTGGGTTTGATTTCTGGGTTGGGAGGATCCCCTGGAGGAGGAAATGGCAACCCACTCCAGTATTCCTGCCTAGGAAATCCCATAGACAGAGGAGCCGCGTGGGTTACAGTCCACGGGTTGCAAAGAGTGAGACATGACTGAACAGCAACAGAAAAATGTTCCACTTATACATGTACCACAACTTCTTTATCCATTCATCTGTTAATGGACATTTAGGTTGCTTAGTCAAAGGAAATATACCAGAGAACATAAGATCATGTTTATCTGCAGATCTGACTTGTTCTGTGATTGTGGGATGTTTGTTTGTTTAATGCTTATCTCTTTTCAATTTTTGTAAGCTTCAAAGGATAATGAACTGTCTTTTTTCTTCCCCTTTATCAATTGCCCAAATGAAACAAGTGTGATTATTCACTTAATGATGATATTAAGTGGTATATTTCAAATGACTCTAGATTGATAGAGTATTGACCAGAAAGCTTCAATAATAAACATGAATTAAATGTCTTCTTTAGTTCCAAGAATGATCCTGGGAAATGAGGAAGCATAAGTGAATGAAACTTGATTCTTGATCATGGGAGATCTCATGGATCAAAACAGATTTCCTTAAAATAATGAAAATGAATTTCCATTGATCTCTTTATTCTTTACAGAGTCGTTACCACAAGGGCACAGAAGAAATGACACAGCAGGGTTCTCCTTTAAAAGGGGTCTGTAGACTGGTGTTAATACAGACTGACTTTAGAGCAAATCACATTTGATTTTCGACTCTCAGATTTTTTGGTACCAGGCTATAAAATTTTAAAAAATAGTCAAGGGATATCATTTTGTTTTCCCACTCCAGTATTCTTGCCTGGAGAATCCTGTGGACAGAGGAGCCTGGTGGGCTACAGCCCATGGGGTTGCAAAGAGTCAGATACTCCTGAGCGTGCACACACACACAGGATATCATTCACACATGTCTGGAATCATCAGAAAAATATCTGTGAAGTCTTACTGAAAGATTTTTCTGTGATGTGACACATTTCTTATCCCCTGGTATTTTCAG
Seq C2 exon
ATATCAAGAAATGAGAAAATGTGGAAAATTTGGTTTGATAAGGAAAACCCTGAGGAGGAACCCCTTCCAAATGCCTATGATAAATCTCTTGACTGCTTTCGACGTCTTCTCCTTATTAGATCCTGGTGTCCTGACAGAACCATTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972:ENSBTAT00000061278:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]