GgaINT0093209 @ galGal3
Intron Retention
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78603120-78604329:+
Coord C1 exon
chr2:78603120-78603241
Coord A exon
chr2:78603242-78604179
Coord C2 exon
chr2:78604180-78604329
Length
938 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CTTTGTTGGCATAACCACAGATT
3' ss Score
4.5
Exon sequences
Seq C1 exon
GTGGTGCTTCCCTAGACCTTAAAACTTGTCCTCCCAAGCCAGCTAAATGGATCCTGGATATGACTTGGCTGAATTTGGTGGAGCTTAGTAAACTTAGCCAATTTTCACATATTCTTGACCAA
Seq A exon
GTAAGCAAAAGCTTTTTAAAATAATATGTTTTCTGGGGAAGATTGTTTGATAATGATCAAGACTTGGAGTGAGAAACTGGTTTATTTTGTAAACAGGGTGAAAATGATGGCTTCAAAGTAATTAGTTTTGGCCCTGACTGCTAAGCAAACAGTATAAAAAGACTTAATAAGAAAATGAAAAGTGGCACCAAAAGAAAAAAATAAGCCACCACCAAACAATCCCCTCCCCTCAAAAAACCAAAACAATAACAACAACAAAAACAGGCAAAAAGCAATCACAAAACAAAACCAACACAGGAAAATTGAAAGAAAGTAGAAACTTTCACACACTATGGTTATACACCTTTCACTTTGGGATACATCTTTACAACTTGCCATTATCCAATTCACATAGTGTCATTTGACTCTTCCTCAAGATTGTTAGAATTTCTTGCATCCCTGTCTTGCTTTCTTAAACTGTGTTTTATGATGTTTGTTCCAATGTTGTACTGATTACTTGCACCTTGAAGAGCCTTGACGATACTAATTGTATAGTAAAGTGGAGTATGTAAGTTGCAAGTATTATATGTGAATAGTACCTTCTGTACTGTGGGGAGTAGATACGTACCTAGTGTTCTCAAAGCTAACAGCCAATCTATCTGCGTTCTGATCTTGCTATGTAGTTATTTTGTTAGAGGAGAGTACTTAGCAGTAGCCCTTCTTTTCAGAATATGAATGCTTAAAAATGCATTGTTGCATTGTGAAGTTTTGTACTGAAAAGCTGAAAGCTTGTCCTCTCTTTTCTTAATAGCCATACTAAATCTTTGAGTAATGCTGATTAATAAATACTTGTGTGCGGATTAAGTATCTTTAACCCTCATTAAAAGCTTGCGAGCTTGCAATGTTTGTTATGTGACTTCTGTTTAATGACATTTACTCCTTTGTTGGCATAACCACAG
Seq C2 exon
ATTTCTAGAGCAGAGAAAGAGTGGAAGACCTGGTTTGATAAAGAGAATCCTGAAGAAGAACCAGTTCCTTGTGGCTATGGTCAATCCCTGGATTGCTTCAGACGTCTTCTTCTTATCAGATCTTTGTGCCCTGACAGGACCATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997:ENSGALT00000021222:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTTCCCTAGACCTTA
R:
CTGAGCAATGGTCCTGTCAGG
Band lengths:
272-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]