DreINT0058112 @ danRer10
Intron Retention
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9342800-9346935:+
Coord C1 exon
chr16:9342800-9342921
Coord A exon
chr16:9342922-9346785
Coord C2 exon
chr16:9346786-9346935
Length
3864 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AAATGTGTGCATGTTAACAGATT
3' ss Score
5.02
Exon sequences
Seq C1 exon
GAGGTGCTTCCCTAGACCTGAAGGCCTGTCCACCCAAAGCTGCAAAGTGGATCCTGGACATAACGTGGCTTAACTTGGTGGAGCTGAGCAAACTGTGGCAGTTTTCTGACATTCTGGACCAG
Seq A exon
GTGTGTGATCAGATACTTCTACACACATGGCTTCGTAAAGGATCAGACACACCCACACATACTTTAGAACAGACATACGCACGCACACACATTATCTGTCGCTGTGAGCTCCCCTTCCTCATTAAATCCTTCTCACTGCTCCCGCTTTGCAGTAAACATGTCAATATTTGATTCATCTGTTCTACACACACACACACACAGGCACAAATTCATTCACAGCCACTCACACTGATGCTTGATTGGCAGGCCATGACGGCCCGAGGGCACTTCATGCTCAATGCAGTGTGAAATGAGCTCACTTTGGCAAACTCTAAATTAATTACTTGTGGCTAAAAGAAACCAGATTAAACGCCCTTTGTTTAACCATTTGTGTAGCATTGCTGCACGGTAGATTTCATTATACAACATATGTCACAACGTACCTTACGTATGTTCAGCCATTGCATTATAATCAGTTTGGTGTGAATACATCTTTTGAATGTTTTATGTGATGAACAATGTTGATGCTAATAGATTTTTATAAAAGGGATAGTTTGCCGAGATTTTGAAATTCCGTCATCAGTTACTTATCTTTCTGCTATTGTTGGGAACCTGGACTATGAAGTCAAAGGAAATGGGGGAGCAGACTCTGCTGCAAAGGAAGCACTATTAATAAACCCCAAAAATTGACTCTCATTTAGACCTAAAACCAACAATTAGTTTATACATTCAGGGCTCAACAATAAGGACTGCCCGGTGGTCCGGGGCCAGCGTGAAAAAAGCTTGGGACAGTAGACAAAATTGTTACTGGCCCCTATCCGCCAGTAACGAGCCCGTTATTTTTTTACTCATTTTGTTTTTGTATTGCTAACAACCAGTACCGAGAAAAGATGGCAGCATGGCAACAACATCAAACTATGAGGCTGAAAGAAAACGTCTGTTTCTAAAATCTTGGAAGCAGACAATTACATGGGTACAAAATTAAGAAACAAAAAAAAAGAACAAAAAAAAGAGATGTCGTCAGTTTGGTAAGCCATATTCATAATTTTTTTTTAGAATTGTAATAAAATACCAGCACATTTTCCATACTGCTTATTCATTTGCATAAAATCTTGAAATTTGCTCATTATGCATTTATTAACATTTTTAAACGTTTAAATTCTAGATTTACAGACATTATTTTGCCACAATATTTAAAATATGTGGATAAGAAATAGCTATAATTTATTTATTCATTTTTTTATTTTTTTGTGGTGTCAGTGAAAACTTTGGCAGGGTAAGTACAAATCTCAACCACTGGCCTGATTGGCCCTGTAAAAAAAATCCTTAGCATTGAACCCTGTACATTAATACCAAATGGCAAATGGTGATCTTCATACAGGGAGTAAACTCCATGCATTAGCCATAATGTTGGTAAAATTGTTTAATTTTTTTTTTTAAACGATGGGATCTGACTGTTTTTACCCGGCGTAGAATAGATCACTCCAGGATGACACCCACGTTTTCAATACTTAGAGAAGATTCTCCTAAATGCTATATTTCTAAAAGTATGTTTACTATCAAGCATGTTTTATTCCATTATGTTGGCTTTAATTCTGTGAGAAACGTCAGTAACACTTTATTTTGATGGTCTATTTGAGTATTAGTAGACTGTCTGCTTCATATCTGTATTTATAGTGGCTTAGGAATCGTCTGATTGGTGAATCATAAATTGGATATTGCGGGATTAGCCGTAATCATAAGCAGAAGATGGGCGAGGCAGTGACGCAGTAGGTAGTGCTGACGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTCGGCTCAGTTGCCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGTCTTCGCGTGGGTTTCCTCCTTGGCTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGGGCATCTGCTGCGTAAAAACTTGCTGGATAAGTTGGTGGTTCATTCCACTGTGGCAACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGATAAGCAGAAGATCCTCTCGAAATTAATTTATAAATGAACTTCACTTAGTGTTTCTGTAGTACTTTAGTGTTACTGTAGTTACTTAGTACTGTTTTACTGTCAGAAAGAAAGTTTGCGATGACGCATGCTATTAGTAAATCTGACCCATGAAATCATAAAAATATAATAAGTCATGAAGTCATAAGTTTATCAATAAATGATGACAGATATTTCATTTTAGGGTGAGCAGTGCCTTATAATCTAATGGCTCCTTTCCACTGAGTGGCATGATTCAGTAAGCTGTAAAAGTACTGTTCACAATTATTCTCCATTCTCAGAAGTTACTGCAAAAATGTTTTTCTTACTTAGATTTTTTGTCTTGTTCTAGTCCAAATATCTAAAAATGCTTATATCAAGAAGCATTTTCTAGGCAAGCAAAATATATTGTCTTGTTTTCAGAAATAATGTCCTAATATTAAGGAAGTTTTTCCTTAAAACAAGCTGAATAATCTGCCAATGGGGTAAGCAAAATAATCTTGTTTTTTTCCTTTTGACATAAGATTGTTTTGCTCACCCCCTTGGCAGATTATTTAGCTTGTTTTAAGGGAAAACTAACTTAATTTTGGCATTTTGTATCTTAAAACAAGACATTTTGTTTTGCTTGTCTAGAAAATTATGCTAACTCTTTTTAAGAATTTTTAGTTATTTGGACTAGAAAAAAGGCAAAAAAATCTAAGTAAGAAAAGCATTTCTTGCAATGTATACAAAATAGTGAACTGTACCTTTATTATTATTATTTTTTCAATAATTTTAATATATTTCATATTTGAAGTGCTTTGGCAATACTTTACTGATTGTCATGCCAATAAAGCAACTTAATCTTGAATTTGAACTTGTACCTTAACACTTTTTTTGGTCCCCAATTTAGGGCCCACTTCTTTCTCCAATCAATTTTTGAAGGCCCATCTGTCTGACATTTTCTCTAATATGTTTGTATGAAATGTTAAAAACGTCAACCGTCTTTGGTCTATTCTATGGCAGGCTAATGGCCACAGACGAGCTCTCTTAGAAATTGTAAATAGTTAAAAATAGGCACTATTCTTATAAATAAACTGCATAGTTGCAATCCAAACAACTACAATCCTGACTAAAAAAGCCTCAACAGTACATTATGTTGTCTAACAGCAGTAATATTAGTCAAACTGTAGAGCGTCCTCTGCTTGTTGATGATTGTATTTGGGTGGAGTAAAACACAAACACTTTACATGCACACTTGCCGGCAGCTAGCTCTCTGCAACACTCACATGGTCGCCCACTGAAGCTAAGTAGGGCTGAGCCCGGTCAGTACCTGGATGGGAGACCACATGGGAAAGCTGGGTTGTTGCCGGAAATGGTGTTAGTGTGGCAAGCAGGGGGCGGCCAACCTGCGGTCTGTGTGGGTCCTAATGCCCCAGTATAGTGACGGGGACGCTATACTGCTCAGCGAGCGTCGTCTTTCGGATGAGACGTTAAACCTAGGTCCCGACTCTCTGTGGTCGTCGAAAATCCCAGGATGTCCTTTGAAAAAGAGTAGGGGTTTACCCCGGCATCCTGGCCAAATCTGCCCACTGGCCTCTGTCCATCATGGCCTCCTAACCATCCCCATATTCCAATTGGCTTCATCTCTGTTTCCTCTCCACCAATCAGCTGGTGTTTGGTGTGCGGTCTGGCGCAAAATGGCTGCCGTCGCGTCATCCAGGTGGATGTTGCACACTGGTGAACTTCAATAAATTAATTTCAACTTCCCAAGCAATTCATTCACTTTTTTATTTAAATGTGTGCATGTTAACAG
Seq C2 exon
ATTGGCCGTCATGAGAAGCAATGGAGGAGCTGGTTTGATCGAGAGGCTCCAGAGGAAGAACCAATCCCAAATGCATATGACCAGGCTTTGGACTGTTTCAGGCGGCTGCTCCTTATTAGATCTTGGTGTCCAGATAGAACAATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373:ENSDART00000149818:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(49.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]