GgaINT0087359 @ galGal4
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28759740-28761474:-
Coord C1 exon
chr3:28761353-28761474
Coord A exon
chr3:28759856-28761352
Coord C2 exon
chr3:28759740-28759855
Length
1497 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
TATATTAATGTAATATTTAGATA
3' ss Score
4.2
Exon sequences
Seq C1 exon
GAGGTGCAGCACTGGATCTAAAGGCTTGCCCACCTAAACCATTCCGCTGGATTCTTGACATGATGTGGCTAAACTTAGTGGAAATGAGTAAACTTCCACAGTTTGCAAAAATTTTGAATCAG
Seq A exon
GTGATACTTATTAATTATGTTAATCACCAGTTTCACATCATTATTTTGCTAACATACTTCACACTGGAAATGCACATGAAAAGTGTAGTTAAGAACAAAGCCTAAGTGAGTATAGAATAAAGGCACTGAAATGAACATTTAGGTAGTGGGAAACAGCATATATTTATTTGCTGTACATTTTTTCTTTATCTGCTTTTTTTTGTTATTATAATTGAGGTAAACTGAGACCAGGGCCAAAGAAGCTATAAATCAAAAGAAGTCAGAGAGAGACAGAAAGAAGAAAAAAAAGTAGAGATAAACTAGAGATAGATAAACAAGAGATAAAGATAAAGTAGAGATAAACTCTAGAGATAGGGATAAACCTCTGAAGGTTTATCTATGAGTTTCAGGTTTTTTAGTTATATTTTATGTCTTAAGTCTGTTAGATTTTACAAATAAACTGTTTGCTGTCTTTTTAAATAATTGTTTCTGTTCAAAGGTCAAAATATTACTCAGTTATGATAAGCTAACTATAAAAATACTATTTCTGTTATTGAGATATACATGAACTTCTATACATATAAAATTGTTATATTTATTAATTTATTTGCTAAATTTATCTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTAGTTAAAATCCTCCCTAAGCCTTTCTCTTTCTTTTCTTGCCAAGCACTGCTAGTCAGACCTTTGGTCTTATCACTGAGGCCTTCTTGCTGTTGCTGTTACAGCAGTAGTCAAACAAGTTGATTTTGTGATGGTATTCAGTGCCCTGAAGGTTTGCAGAGTCTTCACCTAAATGTTGTATCTGGAAGTAGTCCTGTTTCCCAGCTCTGCATCAAGGAAAGATCTGGATACTTACCTGCCATTTTTCTCCACATTTTGGTTTCTGGGTGTACTGAAACAGTATGTTGAGTCTGGAACAAGCTTGGAGGAATCTAGTCAGGTCTCTGCTCTGGGCTGTTAGGGAACTAGAACCCAGAAAGCATGACACTGTGTACGTTGCTGAGATATTTATCTTTAGTCATGTGTTTATCTATTGAAACCTTTTATTTTTAGTTTGTAGTTTGTAATGATTCTCTGCCTTGCTGGCAGATGCAGTTTCAAATAGGATCCTGTTCTTTTTAACTTGTGATTCTTTGGCTGTCTACACTGTATTGGGACAGAAAGGTTTTTTTCTCTTAGTACTTTGTATTAAGAGAAAATATCATGATGCATTTCTTTTCTAGTACAGAATCCTTCTGCTAATTACTGATTTTAAAATAGCTGCACCTTAATAGTAGCGTTTCTAATTGTAACATTGTAATTCTGATGTGTGTCTTAAGTGCTGCAGTCTGTTATTGTTGCTTGTAATATATTCTAATATAATAAGAAGATTTCATTTAAATATACATTTCCAAGGTGATTGTAACTACAGCTGAAATGTATTTGCATATATTAATGTAATATTTAG
Seq C2 exon
ATAACCAGTAATGAAAAGGGATGGAAAAATTGGTATGATAAAGACGCTCCTGAGGAAGAAATTATTCCTGATGGATATGATTCACTTGACACCTTCCACAGGCTTTTACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000038200:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCAGCACTGGATCTAA
R:
CTGATAAGTAAAAGCCTGTGGAAG
Band lengths:
238-1735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]